ggKbase home page

L3_079_062G2_scaffold_25

Search features with annotation key words

Displaying items 1-30 of 171 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_062G2_scaffold_25_1
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(81..350)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5F9L6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY00294.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
cytoplasmic protein
L3_079_062G2_scaffold_25_2
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(411..1394)
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5F600_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY00293.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
M1_3947; hypothetical protein
L3_079_062G2_scaffold_25_3
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1698..3071)
DNA (1374bp) protein (458aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9YDM3_9CLOT
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:ENZ10003.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
L3_079_062G2_scaffold_25_4
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3324..4268)
DNA (945bp) protein (315aa)
Uncharacterized protein n=7 Tax=Clostridium RepID=A8RPU1_9CLOT
CMP-binding protein {ECO:0000313|EMBL:ENZ47967.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
metal dependent phosphohydrolase
L3_079_062G2_scaffold_25_5
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4603..5943)
DNA (1341bp) protein (447aa)
Uncharacterized protein n=6 Tax=Clostridium bolteae RepID=A8RPU3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP17070.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
PDZ/DHR/GLGF domain-containing protein
L3_079_062G2_scaffold_25_6
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6133..8571
DNA (2439bp) protein (813aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
Endonuclease MutS2 n=3 Tax=Clostridium RepID=N9X3V1_9CLOT
MutS2 family protein
L3_079_062G2_scaffold_25_7
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8599..9309
DNA (711bp) protein (237aa)
Uncharacterized protein n=17 Tax=Clostridium RepID=A8RPU7_9CLOT
Two-component system response regulator {ECO:0000313|EMBL:ENZ37124.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
winged helix family two component transcriptional regulator
L3_079_062G2_scaffold_25_8
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9306..10712
DNA (1407bp) protein (469aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
Uncharacterized protein n=5 Tax=Clostridium RepID=A8RPU8_9CLOT
Signal transduction histidine kinase
L3_079_062G2_scaffold_25_9
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10877..11917
DNA (1041bp) protein (347aa)
Uncharacterized protein n=3 Tax=Clostridium bolteae RepID=A8RPV0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP17075.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
Putative cell wall binding repeat.
L3_079_062G2_scaffold_25_10
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12146..13090)
DNA (945bp) protein (315aa)
Uncharacterized protein n=4 Tax=Clostridium bolteae RepID=A8RPV1_9CLOT
Glucokinase {ECO:0000313|EMBL:ENZ37127.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
ROK family glucokinase
L3_079_062G2_scaffold_25_11
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13125..14414)
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=R0AL95_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ37128.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
hypothetical protein
L3_079_062G2_scaffold_25_12
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14518..16104)
DNA (1587bp) protein (529aa)
Uncharacterized protein n=4 Tax=Clostridium bolteae RepID=A8RPV4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP17078.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
hypothetical protein
L3_079_062G2_scaffold_25_13
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16164..16673)
DNA (510bp) protein (170aa)
Uncharacterized protein n=12 Tax=Clostridium RepID=A8RPV5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB63021.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
sporulation protein YyaC
L3_079_062G2_scaffold_25_14
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17004..17924)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=R0AWX6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ36557.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
dTDP-glucose pyrophosphorylase
L3_079_062G2_scaffold_25_15
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17975..19297)
DNA (1323bp) protein (441aa)
Succinyl-diaminopimelate desuccinylase n=2 Tax=Clostridium bolteae RepID=R0A772_9CLOT
Succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:ENZ48040.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
peptidase M20
L3_079_062G2_scaffold_25_16
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19330..20373)
DNA (1044bp) protein (348aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
Ribonucleotide reductase, beta subunit (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit beta n=4 Tax=Clostridium bolteae RepID=A8RPW0_9CLOT
L3_079_062G2_scaffold_25_17
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20421..22667)
DNA (2247bp) protein (749aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase n=4 Tax=Clostridium bolteae RepID=A8RPW2_9CLOT
L3_079_062G2_scaffold_25_18
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23058..23921
DNA (864bp) protein (288aa)
Uncharacterized protein n=4 Tax=Clostridium bolteae RepID=A8RPW5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP17086.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
hypothetical protein
L3_079_062G2_scaffold_25_19
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24064..25251)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=R0AWY3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ36562.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
hypothetical protein
L3_079_062G2_scaffold_25_20
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25266..26774)
DNA (1509bp) protein (503aa)
Alginate O-acetylation protein AlgI n=1 Tax=Clostridium bolteae 90B8 RepID=R0AJM7_9CLOT
Alginate O-acetylation protein AlgI {ECO:0000313|EMBL:ENZ36563.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
algI1; alginate O-acetylation protein algI
L3_079_062G2_scaffold_25_21
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27215..28597
DNA (1383bp) protein (461aa)
RNA polymerase sigma-54 factor n=3 Tax=Clostridium RepID=N9X3W7_9CLOT
RNA polymerase sigma-54 factor {ECO:0000313|EMBL:ENZ48046.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
RNA polymerase sigma-54 factor
L3_079_062G2_scaffold_25_22
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29133..29780)
DNA (648bp) protein (216aa)
L-fuculose phosphate aldolase (EC:4.1.2.17)
L-ribulose-5-phosphate 4-epimerase n=3 Tax=Clostridium RepID=R0B6Y5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX97595.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
L3_079_062G2_scaffold_25_23
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29884..30972)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5F217_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX97594.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
Periplasmic binding protein domain containing protein
L3_079_062G2_scaffold_25_24
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31020..31985)
DNA (966bp) protein (322aa)
Uncharacterized protein n=6 Tax=Clostridium RepID=N9X4B8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ48049.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
rbsC; D-ribose transport system permease
L3_079_062G2_scaffold_25_25
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31988..33478)
DNA (1491bp) protein (497aa)
Ribose ABC transporter ATP-binding protein n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9X3X2_9CLOT
Ribose ABC transporter ATP-binding protein {ECO:0000313|EMBL:ENZ10026.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
ABC transporter-like protein
L3_079_062G2_scaffold_25_26
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33491..34963)
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9YQF2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ10027.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
pentulose/hexulose kinase
L3_079_062G2_scaffold_25_27
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34977..35885)
DNA (909bp) protein (303aa)
Glycyl-radical enzyme activating protein family n=2 Tax=Clostridium bolteae RepID=R0B6Z0_9CLOT
Glycyl-radical enzyme activating protein family {ECO:0000313|EMBL:ENZ48052.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
glycyl-radical enzyme activator family protein
L3_079_062G2_scaffold_25_28
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35945..38356)
DNA (2412bp) protein (804aa)
pyruvate formate-lyase (EC:2.3.1.54)
PFL2/glycerol dehydratase family glycyl radical enzyme n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9YP41_9CLOT
PFL2/glycerol dehydratase family glycyl radical enzyme {ECO:0000313|EMBL:ENZ10029.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
L3_079_062G2_scaffold_25_29
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38669..39697
DNA (1029bp) protein (343aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=N9X4C4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ48054.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
LacI family transcriptional regulator
L3_079_062G2_scaffold_25_30
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40074..40787)
DNA (714bp) protein (238aa)
N-acetylmuramoyl-L-alanine amidase CwlD n=2 Tax=Clostridium bolteae RepID=R0A790_9CLOT
N-acetylmuramoyl-L-alanine amidase CwlD {ECO:0000313|EMBL:ENZ48055.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
cell wall hydrolase/autolysin
Displaying items 1-30 of 171 in total

View Taxonomy