ggKbase home page

L3_079_062G2_scaffold_92

Search features with annotation key words

Displaying items 1-30 of 239 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_062G2_scaffold_92_1
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1..3210
DNA (3210bp) protein (1070aa)
Putative outer membrane protein probably involved in nutrient binding n=3 Tax=Bacteroides RepID=Q64XS4_BACFR
TonB-linked outer membrane , SusC/RagA family protein {ECO:0000313|EMBL:EXY91988.1}; TaxID=1339316 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3998T(B)3.;"
putative outer membrane protein probably involved in nutrient binding
L3_079_062G2_scaffold_92_2
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3229..5013
DNA (1785bp) protein (595aa)
Possible outer membrane protein n=8 Tax=Bacteroides RepID=E1WLY7_BACF6
Uncharacterized protein {ECO:0000313|EMBL:EIY51066.1}; TaxID=997878 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL03T00C08.;"
outer membrane protein
L3_079_062G2_scaffold_92_3
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5105..6355)
DNA (1251bp) protein (417aa)
Glycosyl hydrolase {ECO:0000313|EMBL:EXY42162.1}; EC=3.2.1.- {ECO:0000313|EMBL:EXY42162.1};; TaxID=1339308 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3774 T13.;"
Alpha-N-acetylgalactosaminidase n=7 Tax=Bacteroides RepID=C6I5D0_9BACE
putative GFO/IDH/MOCA family oxidoreductase
L3_079_062G2_scaffold_92_4
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6656..7150)
DNA (495bp) protein (165aa)
ribH; putative 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=997878 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL03T00C08.;"
6,7-dimethyl-8-ribityllumazine synthase n=2 Tax=Bacteroides fragilis RepID=E4VV20_BACFG
L3_079_062G2_scaffold_92_5
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7236..7919)
DNA (684bp) protein (228aa)
Uncharacterized protein n=14 Tax=Bacteroides RepID=E1WLZ0_BACF6
hypothetical protein
Tetratricopeptide repeat family protein {ECO:0000313|EMBL:EXZ79713.1}; TaxID=1339335 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3-F-2 #6.;"
L3_079_062G2_scaffold_92_6
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8080..9192
DNA (1113bp) protein (371aa)
DNA replication and repair protein RecF n=10 Tax=Bacteroides RepID=RECF_BACFR
DNA replication and repair protein RecF
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=997883 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL07T12C05.;"
L3_079_062G2_scaffold_92_7
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9189..9479
DNA (291bp) protein (97aa)
Uncharacterized protein n=18 Tax=Bacteroides RepID=E1WLZ2_BACF6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EXZ06720.1}; TaxID=1339276 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. DS-208.;"
L3_079_062G2_scaffold_92_8
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9501..9662
DNA (162bp) protein (54aa)
Uncharacterized protein n=4 Tax=Bacteroides RepID=Q64XR6_BACFR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD47710.1}; TaxID=295405 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain YCH46).;"
L3_079_062G2_scaffold_92_9
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9602..10390)
DNA (789bp) protein (263aa)
Histidinol phosphate phosphatase HisJ family protein n=6 Tax=Bacteroides RepID=I8WSP7_BACFG
putative histidinol-phosphatase
Histidinol phosphate phosphatase HisJ family protein {ECO:0000313|EMBL:EIY51072.1}; TaxID=997878 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL03T00C08.;"
L3_079_062G2_scaffold_92_10
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10387..10764)
DNA (378bp) protein (126aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1339289 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3986 N(B)19.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Bacteroides sp. 2_1_16 RepID=D1JJ59_9BACE
putative 5-formyltetrahydrofolate cyclo-ligase
L3_079_062G2_scaffold_92_11
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10847..12574)
DNA (1728bp) protein (576aa)
Carboxy-terminal processing protease n=10 Tax=Bacteroides RepID=Q64XR3_BACFR
C-terminal processing peptidase {ECO:0000313|EMBL:EIY99670.1}; TaxID=997883 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL07T12C05.;"
carboxy-terminal processing protease precursor
L3_079_062G2_scaffold_92_12
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12652..13089)
DNA (438bp) protein (146aa)
Deoxycytidylate deaminase n=15 Tax=Bacteroides RepID=Q64XR2_BACFR
deoxycytidylate deaminase
Putative deoxycytidylate deaminase {ECO:0000313|EMBL:CAH06625.1}; TaxID=272559 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC; 9343).;"
L3_079_062G2_scaffold_92_13
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13101..13610)
DNA (510bp) protein (170aa)
Uncharacterized protein n=11 Tax=Bacteroides RepID=E1WLZ7_BACF6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD47715.1}; TaxID=295405 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain YCH46).;"
L3_079_062G2_scaffold_92_14
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13617..15674)
DNA (2058bp) protein (686aa)
dcp; putative peptidyl-dipeptidase (EC:3.4.15.5)
Uncharacterized protein n=8 Tax=Bacteroides RepID=I3HRI9_BACFG
Peptidase M3 family protein {ECO:0000313|EMBL:EYA20670.1}; TaxID=1339337 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 1007-1-F #3.;"
L3_079_062G2_scaffold_92_15
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15898..16899)
DNA (1002bp) protein (334aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1339329 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. S23L17.;"
Glyceraldehyde-3-phosphate dehydrogenase n=13 Tax=Bacteroides RepID=G3P_BACFR
glyceraldehyde 3-phosphate dehydrogenase
L3_079_062G2_scaffold_92_16
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17039..17479
DNA (441bp) protein (147aa)
Large-conductance mechanosensitive channel n=12 Tax=Bacteroides RepID=MSCL_BACFN
mscL; putative large-conductance mechanosensitive channel
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1339318 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. S6L5.;"
L3_079_062G2_scaffold_92_17
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17510..19033
DNA (1524bp) protein (508aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1339280 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 2-F-2 #4.;"
GMP synthase [glutamine-hydrolyzing] n=14 Tax=Bacteroides RepID=GUAA_BACFN
glutaminne-hydrolyzing GMP synthase
L3_079_062G2_scaffold_92_18
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19638..21662)
DNA (2025bp) protein (675aa)
Uncharacterized protein n=12 Tax=Bacteroides RepID=Q5LGV4_BACFN
Starch-binding associating with outer membrane family protein {ECO:0000313|EMBL:EXY75384.1}; TaxID=1339315 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3988T(B)14.;"
hypothetical protein
L3_079_062G2_scaffold_92_19
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21678..24947)
DNA (3270bp) protein (1090aa)
Putative uncharacterized protein n=1 Tax=Bacteroides sp. 2_1_56FAA RepID=F7LLJ9_9BACE
TonB-linked outer membrane , SusC/RagA family protein {ECO:0000313|EMBL:EXZ20649.1}; TaxID=1339271 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. J-143-4.;"
Putative TonB-dependent outer membrane receptor protein
L3_079_062G2_scaffold_92_20
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25876..27918)
DNA (2043bp) protein (681aa)
Uncharacterized protein n=7 Tax=Bacteroides RepID=I9G5F5_BACFG
Starch-binding associating with outer membrane family protein {ECO:0000313|EMBL:EXY75387.1}; TaxID=1339315 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3988T(B)14.;"
hypothetical protein
L3_079_062G2_scaffold_92_21
Bacteroides fragilis CAG:47, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27932..31198)
DNA (3267bp) protein (1089aa)
SusC/RagA family TonB-linked outer membrane protein n=6 Tax=Bacteroides RepID=C6I5B1_9BACE
Putative outer membrane receptor protein {ECO:0000313|EMBL:CDD38282.1}; TaxID=1263046 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides fragilis CAG:47.;"
putative outer membrane receptor protein
L3_079_062G2_scaffold_92_22
Bacteroides sp. 2_1_16, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32116..32973
DNA (858bp) protein (286aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=469587 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_16.;"
Enoyl-[acyl-carrier-protein] reductase [NADH] n=18 Tax=Bacteroides RepID=E1WM07_BACF6
putative enoyl-[acyl-carrier-protein] reductase [NADH]
L3_079_062G2_scaffold_92_23
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32978..33991
DNA (1014bp) protein (338aa)
Uncharacterized protein n=13 Tax=Bacteroides RepID=E1WM08_BACF6
hypothetical protein
Gliding motility-associated lipoprotein GldB {ECO:0000313|EMBL:EXZ54980.1}; TaxID=1339299 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3397 T14.;"
L3_079_062G2_scaffold_92_24
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34018..34722
DNA (705bp) protein (235aa)
Uncharacterized protein n=12 Tax=Bacteroides RepID=E1WM09_BACF6
hypothetical protein
Tetrapyrrole (Corrin/Porphyrin) Methylases family protein {ECO:0000313|EMBL:EYA40372.1}; TaxID=1339279 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 20793-3.;"
L3_079_062G2_scaffold_92_25
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34688..35806)
DNA (1119bp) protein (373aa)
Uncharacterized protein n=13 Tax=Bacteroides RepID=Q64XQ1_BACFR
putative transmembrane protein
Putative membrane protein {ECO:0000313|EMBL:EXZ54982.1}; TaxID=1339299 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3397 T14.;"
L3_079_062G2_scaffold_92_26
Bacteroides sp. 2_1_56FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35871..36737)
DNA (867bp) protein (289aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=665938 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_56FAA.;"
Lipoyl synthase n=1 Tax=Bacteroides sp. 2_1_56FAA RepID=F7LLK7_9BACE
lipA; putative lipoic acid synthetase
L3_079_062G2_scaffold_92_27
Bacteroides fragilis CAG:47, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36864..39074)
DNA (2211bp) protein (737aa)
Peptidase, S9A/B/C family, catalytic domain protein n=7 Tax=Bacteroides RepID=D1JJ77_9BACE
Putative dipeptidyl peptidase {ECO:0000313|EMBL:CDD38288.1}; TaxID=1263046 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides fragilis CAG:47.;"
putative dipeptidyl peptidase
L3_079_062G2_scaffold_92_28
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

39510..40238
DNA (729bp) protein (243aa)
Uncharacterized protein n=4 Tax=Bacteroides RepID=D1JJ79_9BACE
putative transmembrane protein
Uncharacterized protein {ECO:0000313|EMBL:EXZ86774.1}; TaxID=1339273 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. B1 (UDC16-1).;"
L3_079_062G2_scaffold_92_29
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40248..41090
DNA (843bp) protein (281aa)
LytTr DNA-binding domain protein n=8 Tax=Bacteroides RepID=D1JJ80_9BACE
LytTr DNA-binding domain protein {ECO:0000313|EMBL:EXY66659.1}; TaxID=1339289 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3986 N(B)19.;"
putative transmembrane and transcriptional regulatory protein
L3_079_062G2_scaffold_92_30
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

41424..42359
DNA (936bp) protein (312aa)
TIGR01212 family radical SAM protein n=5 Tax=Bacteroides RepID=I3HRH5_BACFG
TIGR01212 family radical SAM protein {ECO:0000313|EMBL:EIY51093.1}; TaxID=997878 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL03T00C08.;"
hypothetical protein
Displaying items 1-30 of 239 in total

View Taxonomy