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L3_079_062G2_scaffold_290

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_062G2_scaffold_290_1
unknown

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1..114
DNA (114bp) protein (38aa)

This feature has no annotations

L3_079_062G2_scaffold_290_2
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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354..1475
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D2S7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU77446.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
hypothetical protein
L3_079_062G2_scaffold_290_3
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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2431..3597
DNA (1167bp) protein (389aa)
Na(+)/H(+) antiporter NhaA n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DJ51_9FIRM
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Na+/H+ antiporter NhaA
L3_079_062G2_scaffold_290_4
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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3853..5040
DNA (1188bp) protein (396aa)
Na(+)/H(+) antiporter NhaA n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9CYU4_9FIRM
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Na+/H+ antiporter NhaA
L3_079_062G2_scaffold_290_5
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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5303..6121
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9CZK6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU77443.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
hypothetical protein
L3_079_062G2_scaffold_290_6
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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6474..7298
DNA (825bp) protein (275aa)
Pur operon repressor PurR n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DEY2_9FIRM
Pur operon repressor PurR {ECO:0000313|EMBL:EKU77442.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
purine operon repressor, PurR
L3_079_062G2_scaffold_290_7
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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7303..8682
DNA (1380bp) protein (460aa)
Bifunctional protein GlmU n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D2S5_9FIRM
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
UDP-N-acetylglucosamine pyrophosphorylase
L3_079_062G2_scaffold_290_8
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

8792..9745
DNA (954bp) protein (318aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Ribose-phosphate pyrophosphokinase n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DJ47_9FIRM
ribose-phosphate pyrophosphokinase
L3_079_062G2_scaffold_290_9
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

9853..10425
DNA (573bp) protein (191aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Peptidyl-tRNA hydrolase n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9CYU1_9FIRM
peptidyl-tRNA hydrolase
L3_079_062G2_scaffold_290_10
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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10747..10944
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9CZK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU77438.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
L3_079_062G2_scaffold_290_11
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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11019..11522
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DEY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU77437.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
hydrolase
L3_079_062G2_scaffold_290_12
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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11663..13189
DNA (1527bp) protein (509aa)
Uncharacterized protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D2S2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU77436.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Orn/Lys/Arg decarboxylase major region
L3_079_062G2_scaffold_290_13
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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13200..13880
DNA (681bp) protein (227aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Thymidylate kinase n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DJ45_9FIRM
thymidylate kinase
L3_079_062G2_scaffold_290_14
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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13954..14997
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9CYT7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU77434.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
DNA polymerase III subunits gamma/tau
L3_079_062G2_scaffold_290_15
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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14994..15839
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9CZK1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU77433.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
PSP1 domain-containing protein
L3_079_062G2_scaffold_290_16
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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15796..16557
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DEX6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU77432.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
methyltransferase small
L3_079_062G2_scaffold_290_17
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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16544..17404
DNA (861bp) protein (287aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D2R9_9FIRM
uroporphyrin-III C/tetrapyrrole methyltransferase
L3_079_062G2_scaffold_290_18
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


17518..19206
DNA (1689bp) protein (563aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Methionine--tRNA ligase n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DJ41_9FIRM
methionyl-tRNA synthetase
L3_079_062G2_scaffold_290_19
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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19231..19548
DNA (318bp) protein (106aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Methionine--tRNA ligase n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DJ41_9FIRM
Methionyl-tRNA synthetase suspected. See adjacent gene [L3_079_062G2_scaffold_290_18].
methionyl-tRNA synthetase
L3_079_062G2_scaffold_290_20
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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19550..20320
DNA (771bp) protein (257aa)
TatD family hydrolase n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9CYT5_9FIRM
TatD family hydrolase {ECO:0000313|EMBL:EKU77429.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
TatD family hydrolase
L3_079_062G2_scaffold_290_21
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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20538..22076
DNA (1539bp) protein (513aa)
Exopolyphosphatase n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9CZJ6_9FIRM
Exopolyphosphatase {ECO:0000313|EMBL:EKU77428.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Ppx/GppA phosphatase
L3_079_062G2_scaffold_290_22
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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22087..23637
DNA (1551bp) protein (517aa)
Uncharacterized protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DEX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU77427.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Exopolyphosphatase-like protein
L3_079_062G2_scaffold_290_23
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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23641..25755
DNA (2115bp) protein (705aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Polyphosphate kinase n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D2R5_9FIRM
polyphosphate kinase
L3_079_062G2_scaffold_290_24
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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26217..27221
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DJ39_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU77425.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
hypothetical protein
L3_079_062G2_scaffold_290_25
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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27451..27990
DNA (540bp) protein (180aa)
Ribonuclease M5 {ECO:0000256|HAMAP-Rule:MF_01469}; EC=3.1.26.8 {ECO:0000256|HAMAP-Rule:MF_01469};; RNase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; Ribosomal RNA terminal maturase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Ribonuclease M5 n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9CYT1_9FIRM
primase/topoisomerase-like protein
L3_079_062G2_scaffold_290_26
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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28022..28882
DNA (861bp) protein (287aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9CZJ4_9FIRM
dimethyladenosine transferase
L3_079_062G2_scaffold_290_27
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

29103..29945
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DEX2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU77422.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
polysaccharide deacetylase
L3_079_062G2_scaffold_290_28
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(30568..32163)
DNA (1596bp) protein (532aa)
Peptide chain release factor 3 n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9D2R4_9FIRM
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
peptide chain release factor 3
L3_079_062G2_scaffold_290_29
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

32436..34889
DNA (2454bp) protein (818aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
DNA topoisomerase n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DJ35_9FIRM
DNA topoisomerase III
L3_079_062G2_scaffold_290_30
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(35056..36318)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9CYS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU77419.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
DEAD/DEAH box helicase
Displaying items 1-30 of 39 in total

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