ggKbase home page

L3_079_062G2_scaffold_377

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_062G2_scaffold_377_1
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..458)
DNA (456bp) protein (152aa)
UvrABC system protein A n=2 Tax=Salmonella enterica I RepID=V1LNF6_SALET
uvrA; excinuclease ABC subunit A
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=476213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella paratyphi C (strain RKS4594).;"
L3_079_062G2_scaffold_377_2
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

711..1238
DNA (528bp) protein (176aa)
Single-stranded DNA-binding protein n=2 Tax=Citrobacter RepID=R8VTA3_9ENTR
Single-stranded DNA-binding protein {ECO:0000313|EMBL:AKE61111.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
single-stranded DNA-binding protein
L3_079_062G2_scaffold_377_3
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1607..3913
DNA (2307bp) protein (769aa)
Outer membrane autotransporter barrel domain-containing protein n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SAX7_CITFR
Autotransporter {ECO:0000313|EMBL:KEY51687.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
outer membrane autotransporter barrel domain protein
L3_079_062G2_scaffold_377_4
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4065..4346)
DNA (282bp) protein (94aa)
Putative membrane protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TPX1_CITRI
Membrane protein {ECO:0000313|EMBL:AKE61159.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
hypothetical protein
L3_079_062G2_scaffold_377_5
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4924..6531
DNA (1608bp) protein (536aa)
Putative signal transduction protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TPX3_CITRI
Uncharacterized protein {ECO:0000313|EMBL:KDF10417.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
signal transduction protein
L3_079_062G2_scaffold_377_6
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6534..6857)
DNA (324bp) protein (108aa)
AraC-family transcriptional regulator n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TPX4_CITRI
Transcriptional regulator {ECO:0000313|EMBL:KEY51682.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
soxS; AraC family transcriptional regulator
L3_079_062G2_scaffold_377_7
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6943..7407
DNA (465bp) protein (155aa)
Redox-sensitive transcriptional activator SoxR n=1 Tax=Escherichia coli H489 RepID=E9Y457_ECOLX
Transcriptional regulator {ECO:0000313|EMBL:KEY51681.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
soxR; DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing
L3_079_062G2_scaffold_377_8
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7662..8330
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AN39_CITK8
Putative glutathione S-transferase {ECO:0000313|EMBL:GAL49610.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_079_062G2_scaffold_377_9
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8675..10024
DNA (1350bp) protein (450aa)
Putative permease n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TPX7_CITRI
Permase {ECO:0000313|EMBL:AKE61164.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
permease
L3_079_062G2_scaffold_377_10
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10336..11982
DNA (1647bp) protein (549aa)
Putative sodium/hydrogen exchanger n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TPX8_CITRI
Sodium:proton antiporter {ECO:0000313|EMBL:KEY51678.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
sodium/hydrogen exchanger
L3_079_062G2_scaffold_377_11
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12083..12985)
DNA (903bp) protein (301aa)
Uncharacterized protein n=2 Tax=Citrobacter RepID=C1MFJ3_9ENTR
Transcriptional regulator {ECO:0000313|EMBL:KEY51675.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
transcriptional regulator
L3_079_062G2_scaffold_377_12
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13088..13498
DNA (411bp) protein (137aa)
Holin-like protein CidA n=1 Tax=Salmonella bongori N268-08 RepID=S5N334_SALBN
Uncharacterized protein {ECO:0000313|EMBL:KDF10427.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
LrgA
L3_079_062G2_scaffold_377_13
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13491..14180
DNA (690bp) protein (230aa)
LrgB-like family protein n=6 Tax=Salmonella newport RepID=I9JSA6_SALNE
LrgB {ECO:0000313|EMBL:KEY51673.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
hypothetical protein
L3_079_062G2_scaffold_377_14
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14222..14848)
DNA (627bp) protein (209aa)
Cation/acetate symporter ActP n=2 Tax=Salmonella enterica I RepID=L9QXX6_SALGL
Acetate permease {ECO:0000313|EMBL:AKE61170.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
actP; acetate permease
L3_079_062G2_scaffold_377_15
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14863..15867)
DNA (1005bp) protein (335aa)
Cation/acetate symporter ActP n=2 Tax=Citrobacter RepID=R8VTB4_9ENTR
Cation/acetate symporter ActP {ECO:0000256|HAMAP-Rule:MF_01426, ECO:0000256|SAAS:SAAS00025334}; Acetate permease {ECO:0000256|HAMAP-Rule:MF_01426}; Acetate transporter ActP {ECO:0000256|HAMAP-Rule:MF_01426}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
actP; acetate permease
L3_079_062G2_scaffold_377_16
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15864..16178)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BKQ7_9ENTR
Membrane protein {ECO:0000313|EMBL:AKE61171.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
membrane protein
L3_079_062G2_scaffold_377_17
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16417..18375)
DNA (1959bp) protein (653aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
Acetyl-coenzyme A synthetase n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=ACSA_CITK8
acetyl-CoA synthetase
L3_079_062G2_scaffold_377_18
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18806..20242
DNA (1437bp) protein (479aa)
Cytochrome c-552 {ECO:0000256|SAAS:SAAS00233541}; EC=1.7.2.2 {ECO:0000256|SAAS:SAAS00233490};; Ammonia-forming cytochrome c nitrite reductase {ECO:0000256|HAMAP-Rule:MF_01182}; Flags: Precursor;; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
Cytochrome c-552 n=4 Tax=Citrobacter RepID=J1FWV5_9ENTR
nrfA; cytochrome c552
L3_079_062G2_scaffold_377_19
Citrobacter rodentium, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20355..20918
DNA (564bp) protein (188aa)
Cytochrome c-type protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TPY6_CITRI
nrfB; cytochrome c-type protein
Cytochrome c-type protein {ECO:0000313|EMBL:CBG90173.1}; Flags: Precursor;; TaxID=637910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter rodentium (strain ICC168) (Citrobacter freundii biotype; 4280).;"
L3_079_062G2_scaffold_377_20
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20915..21586
DNA (672bp) protein (224aa)
Cytochrome c nitrite reductase, Fe-S protein n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BKQ3_9ENTR
Nitrite reductase {ECO:0000313|EMBL:AKE61175.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
nitrite reductase
L3_079_062G2_scaffold_377_21
Citrobacter koseri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21583..22539
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AN23_CITK8
hypothetical protein
Cytochrome c-type biogenesis protein {ECO:0000313|EMBL:CDZ85333.1}; TaxID=545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter koseri (Citrobacter diversus).;"
L3_079_062G2_scaffold_377_22
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22611..24275
DNA (1665bp) protein (555aa)
heme lyase subunit NrfE n=1 Tax=Citrobacter freundii RepID=UPI00037F7C01
Heme lyase {ECO:0000313|EMBL:AKE61177.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
heme lyase
L3_079_062G2_scaffold_377_23
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24268..24804
DNA (537bp) protein (179aa)
Formate-dependent nitrite reductase complex subunit NrfF n=2 Tax=Salmonella enterica I RepID=M3KQR1_SALNE
Nitrite reductase {ECO:0000313|EMBL:AKE61178.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
formate-dependent nitrite reductase complex subunit NrfF
L3_079_062G2_scaffold_377_24
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24801..25409
DNA (609bp) protein (203aa)
Formate-dependent nitrite reductase complex subunit n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TPZ1_CITRI
Nitrite reductase {ECO:0000313|EMBL:KEY51663.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
nrfG; formate-dependent nitrite reductase complex subunit
L3_079_062G2_scaffold_377_25
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25807..27117
DNA (1311bp) protein (437aa)
Proton glutamate symport protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TPZ2_CITRI
Proton glutamate symporter protein {ECO:0000313|EMBL:KDF10439.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
gltP; proton glutamate symport protein
L3_079_062G2_scaffold_377_26
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27461..28129)
DNA (669bp) protein (223aa)
Putative exported protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TPZ3_CITRI
Uncharacterized protein {ECO:0000313|EMBL:KDF10440.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
hypothetical protein
L3_079_062G2_scaffold_377_27
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28324..29442)
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AN16_CITK8
Formate dehydrogenase H {ECO:0000313|EMBL:GAL49628.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_079_062G2_scaffold_377_28
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29552..29878
DNA (327bp) protein (109aa)
Putative exported protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TQ03_CITRI
Membrane protein {ECO:0000313|EMBL:AKE61190.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
hypothetical protein
L3_079_062G2_scaffold_377_29
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29875..30633)
DNA (759bp) protein (253aa)
Carbon-phosphorus lyase complex accessory protein n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3BK14_CITFR
Protein phnP {ECO:0000313|EMBL:KDF10444.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
phnP; carbon-phosphorus lyase complex accessory protein
L3_079_062G2_scaffold_377_30
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30697..31131)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AMZ0_CITK8
Aminoalkylphosphonic acid N-acetyltransferase {ECO:0000313|EMBL:AKE61194.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
aminoalkylphosphonic acid N-acetyltransferase
Displaying items 1-30 of 33 in total

View Taxonomy