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L3_079_062G2_scaffold_424

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_062G2_scaffold_424_1
unknown

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1..99
DNA (99bp) protein (33aa)

This feature has no annotations

L3_079_062G2_scaffold_424_2
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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199..1446
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Morganella morganii SC01 RepID=M7CIQ4_MORMO
Transporter {ECO:0000313|EMBL:KEY45114.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
hypothetical protein
L3_079_062G2_scaffold_424_3
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1511..2323)
DNA (813bp) protein (271aa)
Shikimate 5-dehydrogenase n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SAS9_CITFR
Shikimate 5-dehydrogenase {ECO:0000313|EMBL:KDF10357.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
shikimate 5-dehydrogenase
L3_079_062G2_scaffold_424_4
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2325..3545)
DNA (1221bp) protein (407aa)
sorE; putative L-sorbose 1-phosphate reductase (EC:1.1.1.-)
L-sorbose 1-phosphate reductase n=1 Tax=Citrobacter sp. 30_2 RepID=C1MFD9_9ENTR
L-sorbose 1-phosphate reductase {ECO:0000313|EMBL:KDF10358.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
L3_079_062G2_scaffold_424_5
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3599..4423)
DNA (825bp) protein (275aa)
PTS system, mannose/fructose/sorbose , IID component family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6G6E8_SHIFL
PTS mannose transporter subunit IID {ECO:0000313|EMBL:AKE61065.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
PTS system, mannose/fructose/sorbose family, IID component
L3_079_062G2_scaffold_424_6
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4435..5232)
DNA (798bp) protein (266aa)
PTS system, mannose/fructose/sorbose , IIC component family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6G6E7_SHIFL
Uncharacterized protein {ECO:0000313|EMBL:KDF10360.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
PTS system L-sorbose-specific IIC component, Man family
L3_079_062G2_scaffold_424_7
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5482..5976)
DNA (495bp) protein (165aa)
Sorbose-specific phosphotransferase enzyme IIB component n=1 Tax=Citrobacter sp. 30_2 RepID=C1MFE2_9ENTR
PTS friuctose transporter subunit IIB {ECO:0000313|EMBL:KEY45119.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
PTS system L-sorbose-specific IIB component, Man family
L3_079_062G2_scaffold_424_8
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5976..6383)
DNA (408bp) protein (136aa)
PTS system, mannose/fructose/sorbose family, IIA component n=1 Tax=Citrobacter sp. 30_2 RepID=C1MFE3_9ENTR
PTS sorbose transporter subunit IIA {ECO:0000313|EMBL:AKE61068.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
PTS system L-sorbose-specific IIA component, Man family
L3_079_062G2_scaffold_424_9
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6393..7199)
DNA (807bp) protein (269aa)
Uncharacterized protein n=6 Tax=Citrobacter RepID=J0LT00_9ENTR
Sorbitol-6-phosphate 2-dehydrogenase {ECO:0000313|EMBL:KDF10363.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
L3_079_062G2_scaffold_424_10
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7270..8223)
DNA (954bp) protein (318aa)
Sorbitol operon regulator n=3 Tax=Citrobacter RepID=J1FWT9_9ENTR
Sorbitol operon regulator {ECO:0000313|EMBL:KDF10364.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
transcriptional regulator with sigma factor-related N-terminal domain
L3_079_062G2_scaffold_424_11
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8567..9445
DNA (879bp) protein (293aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
Pseudouridine synthase n=2 Tax=Citrobacter RepID=R8VPJ7_9ENTR
23S rRNA pseudouridylate synthase
L3_079_062G2_scaffold_424_12
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9442..9714)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8ANB0_CITK8
Uncharacterized protein {ECO:0000313|EMBL:GAL49563.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_079_062G2_scaffold_424_13
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9778..10536)
DNA (759bp) protein (253aa)
DeoR family regulatory protein n=1 Tax=Salmonella enterica subsp. salamae serovar 58:l,z13,z28:z6 str. 00-0163 RepID=V1FP14_SALCE
DeoR faimly transcriptional regulator {ECO:0000313|EMBL:AKE61073.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
DeoR faimly transcriptional regulator
L3_079_062G2_scaffold_424_14
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10523..11386)
DNA (864bp) protein (288aa)
Cof-like hydrolase family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6G6D8_SHIFL
Hydrolase {ECO:0000313|EMBL:KEY45126.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
hypothetical protein
L3_079_062G2_scaffold_424_15
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11402..12244)
DNA (843bp) protein (281aa)
Uncharacterized protein n=209 Tax=Salmonella choleraesuis RepID=B5QYH8_SALEP
Histidine biosynthesis protein {ECO:0000313|EMBL:KEY45127.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
histidine biosynthesis protein
L3_079_062G2_scaffold_424_16
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12272..13858)
DNA (1587bp) protein (529aa)
Putative membrane protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6G6D6_SHIFL
Uncharacterized protein {ECO:0000313|EMBL:KDF10370.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
hypothetical protein
L3_079_062G2_scaffold_424_17
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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14235..14591
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MFE8_9ENTR
Cytoplasmic protein {ECO:0000313|EMBL:KJC02493.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
L3_079_062G2_scaffold_424_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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14588..14926
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MFE9_9ENTR
Helix-turn-helix domain protein {ECO:0000313|EMBL:KEL78312.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
XRE family transcriptional regulator
L3_079_062G2_scaffold_424_19
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14959..15900)
DNA (942bp) protein (314aa)
sodium transporter n=1 Tax=Citrobacter freundii RepID=UPI00031B8BA1
Bile acid:sodium symporter {ECO:0000313|EMBL:KEY49829.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
Na+-dependent transporter
L3_079_062G2_scaffold_424_20
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16006..17592)
DNA (1587bp) protein (529aa)
Sigma 54-dependent transcriptional regulator for rtcBA expression n=1 Tax=Citrobacter sp. KTE30 RepID=R8V6M5_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KDF10372.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
rtcR; transcriptional regulator
L3_079_062G2_scaffold_424_21
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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18044..19171
DNA (1128bp) protein (376aa)
Band 7 protein n=1 Tax=Enterobacter lignolyticus (strain SCF1) RepID=E3G2K1_ENTLS
SPFH domain / Band 7 family protein {ECO:0000313|EMBL:AKE61079.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
hypothetical protein
L3_079_062G2_scaffold_424_22
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19177..20400
DNA (1224bp) protein (408aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
RNA-splicing ligase RtcB n=1 Tax=Enterobacter lignolyticus (strain SCF1) RepID=E3G2K0_ENTLS
hypothetical protein
L3_079_062G2_scaffold_424_23
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20407..21192
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3D2T2_CITFR
Uncharacterized protein {ECO:0000313|EMBL:GAL49572.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
nucleotidyltransferase
L3_079_062G2_scaffold_424_24
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21254..22603)
DNA (1350bp) protein (450aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
aspartate kinase (EC:2.7.2.4)
Aspartokinase n=2 Tax=Citrobacter RepID=C1MFF3_9ENTR
L3_079_062G2_scaffold_424_25
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22897..24543
DNA (1647bp) protein (549aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TSN9_CITRI
L3_079_062G2_scaffold_424_26
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24964..25206
DNA (243bp) protein (81aa)
Putative exported protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TSN8_CITRI
Uncharacterized protein {ECO:0000313|EMBL:KDF10379.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
hypothetical protein
L3_079_062G2_scaffold_424_27
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25270..25908
DNA (639bp) protein (213aa)
Putative lipoprotein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TSN7_CITRI
Uncharacterized protein {ECO:0000313|EMBL:KDF10380.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
lipoprotein
L3_079_062G2_scaffold_424_28
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25905..26609
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BKV9_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KDF10381.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
hypothetical protein
Displaying 28 items

View Taxonomy