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L3_079_062G2_scaffold_444

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_062G2_scaffold_444_1
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..222)
DNA (222bp) protein (74aa)
Putative thiol:disulfide interchange protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TQT2_CITRI
Thiol:disulfide interchange protein {ECO:0000313|EMBL:AKE61241.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
thiol:disulfide interchange protein
L3_079_062G2_scaffold_444_2
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(283..483)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TQT1_CITRI
Uncharacterized protein {ECO:0000313|EMBL:KEY45256.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
hypothetical protein
L3_079_062G2_scaffold_444_3
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(572..1231)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Enterobacter cloacae subsp. dissolvens SDM RepID=I6S984_ENTCL
Putative DNA-binding protein {ECO:0000313|EMBL:GAL49679.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_079_062G2_scaffold_444_4
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1255..1803)
DNA (549bp) protein (183aa)
Putative fimbrial subunit n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TQS9_CITRI
Fimbrial protein {ECO:0000313|EMBL:KEY45258.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
fimbrial subunit
L3_079_062G2_scaffold_444_5
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1813..2868)
DNA (1056bp) protein (352aa)
minor fimbrial subunit PmfE n=1 Tax=Enterobacter mori RepID=UPI000237B7C1
Putative fimbrial protein {ECO:0000313|EMBL:GAL49677.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
Putative minor fimbrial subunit PmfE
L3_079_062G2_scaffold_444_6
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2868..3491)
DNA (624bp) protein (208aa)
Putative fimbrial subunit n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TQS7_CITRI
Putative fimbrial protein {ECO:0000313|EMBL:GAL49676.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
fimbrial subunit
L3_079_062G2_scaffold_444_7
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3509..4252)
DNA (744bp) protein (248aa)
Putative fimbrial chaperone protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TQS6_CITRI
Molecular chaperone {ECO:0000313|EMBL:KEY51615.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
fimbrial chaperone protein
L3_079_062G2_scaffold_444_8
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4294..6768)
DNA (2475bp) protein (825aa)
UPI0003A34974 related cluster n=1 Tax=unknown RepID=UPI0003A34974
Fimbrial assembly protein {ECO:0000313|EMBL:KEY51616.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
fimbrial usher protein
L3_079_062G2_scaffold_444_9
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6832..7380)
DNA (549bp) protein (183aa)
Putative fimbrial subunit n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TQS4_CITRI
Uncharacterized protein {ECO:0000313|EMBL:KDF10487.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
fimbrial subunit
L3_079_062G2_scaffold_444_10
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7456..7986)
DNA (531bp) protein (177aa)
Major fimbrial subunit PmfA n=1 Tax=Enterobacter mori RepID=UPI000237B7C4
Fimbrial protein {ECO:0000313|EMBL:KEY51618.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
major fimbrial subunit PmfA
L3_079_062G2_scaffold_444_11
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8410..8946)
DNA (537bp) protein (179aa)
Ferredoxin-type protein NapF (Periplasmic nitrate reductase) n=1 Tax=Escherichia coli SCD1 RepID=U9V990_ECOLX
Ferredoxin-type protein NapF {ECO:0000313|EMBL:KDF10483.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
ferredoxin-type protein NapF
L3_079_062G2_scaffold_444_12
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8943..9539)
DNA (597bp) protein (199aa)
Putative oxidoreductase component of anaerobic dehydrogenase n=1 Tax=Escherichia coli SCD1 RepID=U9UVS4_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KDF10482.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
hypothetical protein
L3_079_062G2_scaffold_444_13
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9584..10357)
DNA (774bp) protein (258aa)
Anaerobic dimethyl sulfoxide reductase chain C n=1 Tax=Escherichia coli SCD1 RepID=U9UVQ1_ECOLX
Dimethyl sulfoxide reductase {ECO:0000313|EMBL:KEY51623.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
dimethyl sulfoxide reductase subunit C
L3_079_062G2_scaffold_444_14
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10350..10976)
DNA (627bp) protein (209aa)
Anaerobic dimethyl sulfoxide reductase chain A n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TQR9_CITRI
Dimethylsulfoxide reductase, chain B {ECO:0000313|EMBL:KDF10480.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
anaerobic dimethyl sulfoxide reductase chain A
L3_079_062G2_scaffold_444_15
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10990..12252)
DNA (1263bp) protein (421aa)
Anaerobic dimethyl sulfoxide reductase chain a n=1 Tax=Salmonella enterica subsp. enterica serovar Worthington str. ATCC 9607 RepID=V1INZ6_SALET
Dimethyl sulfoxide reductase {ECO:0000313|EMBL:KEY51625.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
Anaerobic dimethyl sulfoxide reductase chain A
L3_079_062G2_scaffold_444_16
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12222..12950)
DNA (729bp) protein (243aa)
Anaerobic dimethyl sulfoxide reductase subunit A {ECO:0000313|EMBL:CER50619.1}; EC=1.8.5.3 {ECO:0000313|EMBL:CER50619.1};; DmsA4_1 protein {ECO:0000313|EMBL:CEP53762.1}; EC=1.8.5.3 {ECO:0000313|EMBL:CEP53762.1};; TaxID=90370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella typhi.;"
Anaerobic dimethyl sulfoxide reductase chain a (Fragment) n=1 Tax=Salmonella enterica subsp. enterica serovar Havana str. CFSAN001082 RepID=V2LY03_SALET
reductase
L3_079_062G2_scaffold_444_17
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12990..13409)
DNA (420bp) protein (140aa)
Anaerobic dimethyl sulfoxide reductase subunit A n=1 Tax=Salmonella enterica subsp. enterica serovar Meleagridis str. 0047 RepID=V1VAX2_SALET
Uncharacterized protein {ECO:0000313|EMBL:KDF10478.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
dimethyl sulfoxide reductase subunit A
L3_079_062G2_scaffold_444_18
unknown

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13476..13790
DNA (315bp) protein (105aa)

This feature has no annotations

L3_079_062G2_scaffold_444_19
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13887..14837
DNA (951bp) protein (317aa)
Putative outer membrane protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TQR8_CITRI
Uncharacterized protein {ECO:0000313|EMBL:KDF10477.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
hypothetical protein
L3_079_062G2_scaffold_444_20
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14948..16579
DNA (1632bp) protein (544aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
dcuS; two-component sensor kinase (EC:2.7.3.-)
Two-component sensor kinase n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TQR7_CITRI
L3_079_062G2_scaffold_444_21
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16576..17295
DNA (720bp) protein (240aa)
Transcriptional regulatory protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TQR6_CITRI
Transcriptional regulatory protein {ECO:0000256|PIRNR:PIRNR006171}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
dcuR; two-component response regulator
L3_079_062G2_scaffold_444_22
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17931..19271
DNA (1341bp) protein (447aa)
Anaerobic C4-dicarboxylate transporter n=10 Tax=Citrobacter RepID=C1MFQ3_9ENTR
Anaerobic C4-dicarboxylate transporter {ECO:0000256|PIRNR:PIRNR004539}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
C4-dicarboxylate transporter
L3_079_062G2_scaffold_444_23
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19348..20994
DNA (1647bp) protein (549aa)
fumB; fumarate hydratase class I, anaerobic (EC:4.2.1.2)
Fumarate hydratase class I, anaerobic n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TQR4_CITRI
Fumarate hydratase class I, anaerobic {ECO:0000313|EMBL:KDF10473.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
L3_079_062G2_scaffold_444_24
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21139..21774
DNA (636bp) protein (212aa)
Uncharacterized protein n=5 Tax=Escherichia coli RepID=B7NST3_ECO7I
Uncharacterized protein {ECO:0000313|EMBL:KEY51631.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
yjdF; hypothetical protein
L3_079_062G2_scaffold_444_25
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22002..24272
DNA (2271bp) protein (757aa)
Arginine decarboxylase {ECO:0000313|EMBL:KEY51632.1}; EC=4.1.1.19 {ECO:0000313|EMBL:KEY51632.1};; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
arginine decarboxylase (EC:4.1.1.19)
Biodegradative arginine decarboxylase n=1 Tax=Shigella flexneri 1235-66 RepID=I6G8E9_SHIFL
L3_079_062G2_scaffold_444_26
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24607..24981
DNA (375bp) protein (125aa)
HTH-type transcriptional regulator AdiY n=1 Tax=Shigella flexneri 1235-66 RepID=I6G8F0_SHIFL
HTH-type transcriptional regulator AdiY {ECO:0000313|EMBL:KDF10469.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
transcriptional regulator
Displaying 26 items

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