ggKbase home page

L3_079_062G2_scaffold_457

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_062G2_scaffold_457_1
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1..144
DNA (144bp) protein (48aa)
Uncharacterized protein n=5 Tax=Lactobacillus casei group RepID=K6QUU7_LACCA
Uncharacterized protein {ECO:0000313|EMBL:EPC28658.1}; TaxID=1256221 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp22.;"
L3_079_062G2_scaffold_457_2
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

119..934
DNA (816bp) protein (272aa)
Fructose-bisphosphate aldolase n=2 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7T9L5_LACRG
fructose-bisphosphate aldolase
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:BAI40926.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_079_062G2_scaffold_457_3
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

956..1849
DNA (894bp) protein (298aa)
Fructose-bisphosphate aldolase n=3 Tax=Lactobacillus rhamnosus RepID=C7T9L6_LACRG
fructose-bisphosphate aldolase
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:BAI40927.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_079_062G2_scaffold_457_4
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2394..2870)
DNA (477bp) protein (159aa)
PTS system mannose-specific IIB component {ECO:0000313|EMBL:EKS53874.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EKS53874.1};; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
PTS system, mannose-specific IIB component n=4 Tax=Lactobacillus rhamnosus RepID=C7T9L7_LACRG
pts; PTS system mannose-specific transporter subunit IIB
L3_079_062G2_scaffold_457_5
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2842..3270)
DNA (429bp) protein (143aa)
PTS system, mannose-specific IIA component n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7T9L8_LACRG
putative PTS system IIA component
PTS system, mannose-specific IIA component {ECO:0000313|EMBL:CAR86311.1}; Putative PTS system IIA component {ECO:0000313|EMBL:BAI40929.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_079_062G2_scaffold_457_6
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3288..4976)
DNA (1689bp) protein (563aa)
PTS system, mannose-specific IICD component n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7T9L9_LACRG
manZ; PTS system mannose-specific transporter subunit IICD
PTS system, mannose-specific IICD component {ECO:0000313|EMBL:CAR86312.1}; Putative PTS system IICD components {ECO:0000313|EMBL:BAI40930.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_079_062G2_scaffold_457_7
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5016..5726)
DNA (711bp) protein (237aa)
Transaldolase n=3 Tax=Lactobacillus rhamnosus RepID=C7T9M0_LACRG
tal; translaldolase
Transaldolase {ECO:0000313|EMBL:BAI40931.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_079_062G2_scaffold_457_8
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5930..6961
DNA (1032bp) protein (344aa)
Transcriptional regulator n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7T9M1_LACRG
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAI40932.1}; Transcriptional regulator, LacI family {ECO:0000313|EMBL:CAR86314.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_079_062G2_scaffold_457_9
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7200..8114
DNA (915bp) protein (305aa)
Transcriptional regulator, GntR family n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7T9M2_LACRG
yhfZ; GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CAR86315.1}; Uncharacterized protein {ECO:0000313|EMBL:BAI40933.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_079_062G2_scaffold_457_10
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8147..8497
DNA (351bp) protein (117aa)
Conserved protein n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7T9M3_LACRG
hypothetical protein
Conserved protein {ECO:0000313|EMBL:CAR86316.1}; Uncharacterized protein {ECO:0000313|EMBL:BAI40934.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_079_062G2_scaffold_457_11
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8499..8861
DNA (363bp) protein (121aa)
Conserved protein n=3 Tax=Lactobacillus rhamnosus RepID=C7T9M4_LACRG
hypothetical protein
Conserved protein {ECO:0000313|EMBL:CAR86317.1}; Uncharacterized protein {ECO:0000313|EMBL:BAI40935.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_079_062G2_scaffold_457_12
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8922..10217
DNA (1296bp) protein (432aa)
Conserved membrane protein n=3 Tax=Lactobacillus rhamnosus RepID=C7T9M5_LACRG
membrane protein
Putative transport system permease protein {ECO:0000313|EMBL:EKS53896.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_079_062G2_scaffold_457_13
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10247..11131
DNA (885bp) protein (295aa)
Hydrolase n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7T9M6_LACRG
php; hydrolase
Hydrolase {ECO:0000313|EMBL:CAR86319.1}; Putative hydrolase {ECO:0000313|EMBL:BAI40937.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_079_062G2_scaffold_457_14
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11115..12230
DNA (1116bp) protein (372aa)
Pyridoxal phosphate-dependent transferase n=3 Tax=Lactobacillus rhamnosus RepID=C7T9M7_LACRG
yhfS; pyridoxal phosphate-dependent transferase
Pyridoxal phosphate-dependent transferase {ECO:0000313|EMBL:CAR86320.1}; Uncharacterized protein {ECO:0000313|EMBL:BAI40938.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_079_062G2_scaffold_457_15
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12221..13393
DNA (1173bp) protein (391aa)
Amino acid racemase n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7T9M8_LACRG
yhfX; amino acid racemase
Amino acid racemase {ECO:0000313|EMBL:CAR86321.1}; Putative amino acid racemase {ECO:0000313|EMBL:BAI40939.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_079_062G2_scaffold_457_16
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13395..14624
DNA (1230bp) protein (410aa)
Phosphopentomutase n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7T9M9_LACRG
YHFW; mutase
Phosphopentomutase {ECO:0000313|EMBL:BAI40940.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_079_062G2_scaffold_457_17
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14952..15788
DNA (837bp) protein (279aa)
DNA-directed RNA polymerase subunit delta n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7T9N0_LACRG
hypothetical protein
DNA-directed RNA polymerase subunit delta {ECO:0000313|EMBL:CAR86323.1}; Uncharacterized protein {ECO:0000313|EMBL:BAI40941.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_079_062G2_scaffold_457_18
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15871..16431
DNA (561bp) protein (187aa)
UPF0397 protein LGG_00429/LRHM_0415 n=6 Tax=Lactobacillus rhamnosus RepID=C7T9N1_LACRG
hypothetical protein
UPF0397 protein HMPREF0539_2722 {ECO:0000256|HAMAP-Rule:MF_01572}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_079_062G2_scaffold_457_19
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16433..18133
DNA (1701bp) protein (567aa)
ABC transporter ATP-binding protein n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7T9N2_LACRG
ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAI40943.1}; ABC transporter, cobalt transporter eATP-binding protein cbiO {ECO:0000313|EMBL:CAR86325.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
ABC transporter ATP-binding protein
L3_079_062G2_scaffold_457_20
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18130..18957
DNA (828bp) protein (276aa)
ABC transporter permease n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7T9N3_LACRG
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:BAI40944.1}; Cobalt transport protein cbiQ {ECO:0000313|EMBL:CAR86326.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_079_062G2_scaffold_457_21
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19309..20442)
DNA (1134bp) protein (378aa)
o-succinylbenzoate synthase {ECO:0000256|HAMAP-Rule:MF_01933}; Short=OSB synthase {ECO:0000256|HAMAP-Rule:MF_01933};; Short=OSBS {ECO:0000256|HAMAP-Rule:MF_01933};; EC=4.2.1.113 {ECO:0000256|HAMAP-Rule:MF_01933};; 4-(2'-carboxyphenyl)-4-oxybutyric acid synthase {ECO:0000256|HAMAP-Rule:MF_01933}; o-succinylbenzoic acid synthase {ECO:0000256|HAMAP-Rule:MF_01933}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
N-acylamino acid racemase n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C7T9N5_LACRG
N-acylamino acid racemase
L3_079_062G2_scaffold_457_22
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21161..23086
DNA (1926bp) protein (642aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=537973 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei 8700:2.;"
Beta-N-acetylhexosaminidase (GH3) n=5 Tax=Lactobacillus RepID=C7TNJ8_LACRL
nag; beta-N-acetylhexosaminidase
L3_079_062G2_scaffold_457_23
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23556..23855)
DNA (300bp) protein (100aa)
Transposase n=4 Tax=Lactobacillus RepID=C7T9N7_LACRG
transposase
Transposase, IS30 {ECO:0000313|EMBL:EPC85774.1}; TaxID=1256212 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp43.;"
Displaying 23 items

View Taxonomy