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L3_079_062G2_scaffold_127

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Displaying items 1-30 of 81 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_062G2_scaffold_127_1
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(171..2285)
DNA (2115bp) protein (705aa)
Uncharacterized protein related to glutamine synthetase (EC:6.3.1.2)
Glutamate--ammonia ligase, catalytic domain protein n=4 Tax=Lachnospiraceae RepID=A5KQN1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG83852.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L3_079_062G2_scaffold_127_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2476..3318)
DNA (843bp) protein (281aa)
Fructose-1,6-bisphosphate aldolase, class II {ECO:0000313|EMBL:EDY32762.1}; EC=4.1.2.13 {ECO:0000313|EMBL:EDY32762.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist (EC:4.1.2.13)
Fructose-1,6-bisphosphate aldolase, class II n=2 Tax=Ruminococcus lactaris RepID=B5CPH0_9FIRM
L3_079_062G2_scaffold_127_3
unknown

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3438..3620
DNA (183bp) protein (61aa)

This feature has no annotations

L3_079_062G2_scaffold_127_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3735..4667)
DNA (933bp) protein (311aa)
Lipid kinase, YegS/Rv2252/BmrU family {ECO:0000313|EMBL:EDY32763.1}; EC=2.7.1.- {ECO:0000313|EMBL:EDY32763.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Lipid kinase, YegS/Rv2252/BmrU family n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CPH1_9FIRM
conserved protein of unknown function cotranscribed with Bmr (bmrU)
L3_079_062G2_scaffold_127_5
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4838..5098)
DNA (261bp) protein (87aa)
Phosphocarrier, HPr family n=5 Tax=Clostridiales RepID=A5KQN5_9FIRM
Phosphotransferase system {ECO:0000313|EMBL:EFV19859.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Phosphotransferase System HPr (HPr) Family
L3_079_062G2_scaffold_127_6
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5091..6056)
DNA (966bp) protein (322aa)
Putative sporulation transcription regulator WhiA n=4 Tax=Clostridiales RepID=A5KQN6_9FIRM
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein
L3_079_062G2_scaffold_127_7
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6063..6941)
DNA (879bp) protein (293aa)
UPF0042 nucleotide-binding protein RUMTOR_02578 n=5 Tax=Clostridiales RepID=A5KQN7_9FIRM
Nucleotide-binding protein HMPREF1026_00948 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Predicted P-loop-containing kinase
L3_079_062G2_scaffold_127_8
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6945..7850)
DNA (906bp) protein (302aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=5 Tax=Clostridiales RepID=A5KQN8_9FIRM
L3_079_062G2_scaffold_127_9
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8121..9371
DNA (1251bp) protein (417aa)
Hemolysins and related proteins containing CBS domains n=1 Tax=Ruminococcus torques L2-14 RepID=D4M484_9FIRM
Hemolysins and related proteins containing CBS domains
Hemolysins and related proteins containing CBS domains {ECO:0000313|EMBL:CBL26046.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_079_062G2_scaffold_127_10
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9478..10344
DNA (867bp) protein (289aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5Q9X6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25393.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_079_062G2_scaffold_127_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10469..10912)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4Y6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD21821.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_079_062G2_scaffold_127_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10959..12416)
DNA (1458bp) protein (486aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CN40_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY33328.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_079_062G2_scaffold_127_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12454..14043)
DNA (1590bp) protein (530aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8T0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90828.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_079_062G2_scaffold_127_14
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15538..17808)
DNA (2271bp) protein (757aa)
RNA-directed DNA polymerase (Reverse transcriptase) n=1 Tax=Roseburia sp. CAG:303 RepID=R7IST6_9FIRM
RNA-directed DNA polymerase (Reverse transcriptase) {ECO:0000313|EMBL:CDE54378.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
DNA primase small subunit
L3_079_062G2_scaffold_127_15
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17833..18372)
DNA (540bp) protein (180aa)
Group II intron-encoding maturase n=1 Tax=Roseburia sp. CAG:303 RepID=R7IRN9_9FIRM
Group II intron-encoding maturase {ECO:0000313|EMBL:CDE54369.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
retron-type reverse transcriptase
L3_079_062G2_scaffold_127_16
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18383..18667)
DNA (285bp) protein (95aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Roseburia sp. CAG:303 RepID=R7IUM8_9FIRM
CRISPR-associated protein, Cas2 family
L3_079_062G2_scaffold_127_17
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18648..19652)
DNA (1005bp) protein (335aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Roseburia sp. CAG:303 RepID=R7IS80_9FIRM
CRISPR-associated protein Cas1
L3_079_062G2_scaffold_127_18
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19643..21220)
DNA (1578bp) protein (526aa)
CRISPR-associated protein TIGR02710 family n=1 Tax=Roseburia sp. CAG:303 RepID=R7IS27_9FIRM
CRISPR-associated protein TIGR02710 family {ECO:0000313|EMBL:CDE54365.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
CRISPR-associated protein
L3_079_062G2_scaffold_127_19
unknown

Not on your lists

comp(21982..22119)
DNA (138bp) protein (46aa)

This feature has no annotations

L3_079_062G2_scaffold_127_20
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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comp(22088..24340)
DNA (2253bp) protein (751aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6WGA1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC93227.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
CRISPR-associated protein
L3_079_062G2_scaffold_127_21
unknown

Not on your lists

comp(24347..24889)
DNA (543bp) protein (181aa)

This feature has no annotations

L3_079_062G2_scaffold_127_22
Lachnospiraceae bacterium oral taxon 082, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24886..26388)
DNA (1503bp) protein (501aa)
CRISPR-associated RAMP protein n=1 Tax=Lachnospiraceae bacterium oral taxon 082 str. F0431 RepID=H1M072_9FIRM
CRISPR-associated RAMP protein {ECO:0000313|EMBL:EHO48078.1}; TaxID=861454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium oral taxon 082 str. F0431.;"
L3_079_062G2_scaffold_127_23
Lachnoanaerobaculum sp. MSX33, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26381..28732)
DNA (2352bp) protein (784aa)
CRISPR-associated RAMP protein n=1 Tax=Lachnospiraceae bacterium oral taxon 082 str. F0431 RepID=H1M073_9FIRM
CRISPR-associated RAMP protein {ECO:0000313|EMBL:ETO94637.1}; TaxID=936596 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. MSX33.;"
RAMP superfamily.
L3_079_062G2_scaffold_127_24
Lachnoanaerobaculum sp. MSX33, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28725..30365)
DNA (1641bp) protein (547aa)
Uncharacterized protein n=1 Tax=Lachnoanaerobaculum saburreum DSM 3986 RepID=E6LNU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETO94607.1}; TaxID=936596 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. MSX33.;"
hypothetical protein
L3_079_062G2_scaffold_127_25
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30399..31367)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N7F3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS79224.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
cas6_1; CRISPR-associated protein Cas6
L3_079_062G2_scaffold_127_26
Selenomonas sp. oral taxon 149, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(31397..31810)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Selenomonas sp. oral taxon 149 str. 67H29BP RepID=E0NXD8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFM23920.1}; TaxID=864563 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. oral taxon 149 str. 67H29BP.;"
hypothetical protein
L3_079_062G2_scaffold_127_27
unknown

Not on your lists

comp(31988..33673)
DNA (1686bp) protein (562aa)

This feature has no annotations

L3_079_062G2_scaffold_127_28
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33942..37490)
DNA (3549bp) protein (1183aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric (EC:1.2.7.-)
Pyruvate-flavodoxin oxidoreductase n=5 Tax=Clostridiales RepID=A5KNS5_9FIRM
L3_079_062G2_scaffold_127_29
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37827..38792)
DNA (966bp) protein (322aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase n=2 Tax=Ruminococcus lactaris RepID=B5CPS3_9FIRM
L3_079_062G2_scaffold_127_30
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38827..39924)
DNA (1098bp) protein (366aa)
Ribosome-binding ATPase YchF n=2 Tax=Ruminococcus lactaris RepID=B5CPS2_9FIRM
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
GTP-binding protein YchF
Displaying items 1-30 of 81 in total

View Taxonomy
NameRatio
Clostridiales
86.42%
unknown
9.88%
Selenomonadales
1.23%
Erysipelotrichales
1.23%
Bacteroidales
1.23%
Clostridiales: 0.8641975308641975unknown: 0.09876543209876543Bacteroidales: 0.012345679012345678Erysipelotrichales: 0.012345679012345678Selenomonadales: 0.012345679012345678Clostridialesunknown