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L3_079_127G1_scaffold_20

Search features with annotation key words

Displaying items 1-30 of 278 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_127G1_scaffold_20_1
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(805..1422)
DNA (618bp) protein (206aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=D4C9B4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE13592.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L3_079_127G1_scaffold_20_2
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1923..2675)
DNA (753bp) protein (251aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C0FWS6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30068.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L3_079_127G1_scaffold_20_3
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2676..3626)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C9B9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE13597.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L3_079_127G1_scaffold_20_4
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3896..4054)
DNA (159bp) protein (53aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=D4C9C1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY83266.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
hypothetical protein
L3_079_127G1_scaffold_20_5
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4305..5096)
DNA (792bp) protein (264aa)
Electron transport complex, RnfABCDGE type, B subunit n=2 Tax=Clostridium RepID=D4C9C2_9CLOT
Electron transport complex, RnfABCDGE type, B subunit {ECO:0000313|EMBL:EFE13600.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
electron transport complex, RnfABCDGE type, B subunit
L3_079_127G1_scaffold_20_6
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5112..5720)
DNA (609bp) protein (203aa)
Electron transport complex, RnfABCDGE type, A subunit n=3 Tax=Clostridiales RepID=D4MPM5_9FIRM
electron transport complex, RnfABCDGE type, A subunit
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_079_127G1_scaffold_20_7
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5734..6588)
DNA (855bp) protein (285aa)
Electron transport complex RnfABCDGE type E subunit n=2 Tax=Clostridium RepID=R5MDD3_9CLOT
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
RnfABCDGE type electron transport complex subunit E
L3_079_127G1_scaffold_20_8
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6604..7218)
DNA (615bp) protein (205aa)
Predicted NADH:ubiquinone oxidoreductase, subunit RnfG n=3 Tax=Clostridiales RepID=D4MPM7_9FIRM
Predicted NADH:ubiquinone oxidoreductase, subunit RnfG
Electron transport complex subunit G {ECO:0000256|HAMAP-Rule:MF_00479}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_079_127G1_scaffold_20_9
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7218..8153)
DNA (936bp) protein (312aa)
Electron transport complex, RnfABCDGE type, D subunit n=3 Tax=Clostridiales RepID=D4MPM8_9FIRM
electron transport complex, RnfABCDGE type, D subunit
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_079_127G1_scaffold_20_10
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8167..9492)
DNA (1326bp) protein (442aa)
Electron transport complex, RnfABCDGE type, C subunit n=2 Tax=Clostridium RepID=D4C9C7_9CLOT
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
electron transport complex, RnfABCDGE type, C subunit
L3_079_127G1_scaffold_20_11
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9849..13034)
DNA (3186bp) protein (1062aa)
Exonuclease SbcCD C subunit n=1 Tax=Clostridium sp. CAG:149 RepID=R5M120_9CLOT
Exonuclease SbcCD C subunit {ECO:0000313|EMBL:CCY83249.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
ATPase involved in DNA repair
L3_079_127G1_scaffold_20_12
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13031..14218)
DNA (1188bp) protein (396aa)
Exonuclease SbcCD, D subunit n=1 Tax=Clostridium sp. M62/1 RepID=D4C9C9_9CLOT
Exonuclease SbcCD, D subunit {ECO:0000313|EMBL:EFE13607.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
nuclease SbcCD subunit D
L3_079_127G1_scaffold_20_13
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14215..14679)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5LVD4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY83245.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
hypothetical protein
L3_079_127G1_scaffold_20_14
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14883..15209)
DNA (327bp) protein (109aa)
Cupin domain n=4 Tax=Clostridiales RepID=D4MPN1_9FIRM
Cupin domain.
Cupin domain protein {ECO:0000313|EMBL:EFE13609.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_079_127G1_scaffold_20_15
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15243..16286)
DNA (1044bp) protein (348aa)
Reverse transcriptase (RNA-dependent DNA polymerase). (EC:2.7.7.49)
Reverse transcriptase (RNA-dependent DNA polymerase) n=1 Tax=Clostridium sp. M62/1 RepID=D4C9D2_9CLOT
Reverse transcriptase (RNA-dependent DNA polymerase) {ECO:0000313|EMBL:EFE13610.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_079_127G1_scaffold_20_16
unknown

Not on your lists

comp(17040..17228)
DNA (189bp) protein (63aa)

This feature has no annotations

L3_079_127G1_scaffold_20_17
unknown

Not on your lists

17387..17629
DNA (243bp) protein (81aa)

This feature has no annotations

L3_079_127G1_scaffold_20_18
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17549..18382)
DNA (834bp) protein (278aa)
Transcriptional antiterminator, BglG family n=3 Tax=Clostridium RepID=D6DL68_CLOSC
transcriptional antiterminator, BglG family
PRD domain protein {ECO:0000313|EMBL:EFE13615.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_079_127G1_scaffold_20_19
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18406..20637)
DNA (2232bp) protein (744aa)
PTS system, glucose-like IIB component {ECO:0000313|EMBL:EFE13616.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EFE13616.1};; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
PTS system, glucose-like IIB component n=2 Tax=Clostridium RepID=D4C9D8_9CLOT
PTS system IIA component, Glc family (TC 4.A.1)/PTS system IIB component, Glc family (TC 4.A.1)/PTS system IIC component, Glc family (TC 4.A.1)
L3_079_127G1_scaffold_20_20
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21047..22810)
DNA (1764bp) protein (588aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C9E0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE13618.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal
L3_079_127G1_scaffold_20_21
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22971..23480)
DNA (510bp) protein (170aa)
CarD-like/TRCF domain n=3 Tax=Clostridium RepID=D6DL71_CLOSC
CarD-like/TRCF domain.
CarD-like/TRCF domain {ECO:0000313|EMBL:CBK78445.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_127G1_scaffold_20_22
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24297..24821)
DNA (525bp) protein (175aa)
Nitroreductase family protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5MK59_9CLOT
Nitroreductase family protein {ECO:0000313|EMBL:CCY85666.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
hypothetical protein
L3_079_127G1_scaffold_20_23
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25232..26134)
DNA (903bp) protein (301aa)
Response regulator receiver domain protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5M2A8_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:CCY85663.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
Signal transduction histidine kinase
L3_079_127G1_scaffold_20_24
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26112..27902)
DNA (1791bp) protein (597aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
Signal transduction histidine kinase n=1 Tax=butyrate-producing bacterium SM4/1 RepID=D4MPN3_9FIRM
Signal transduction histidine kinase
L3_079_127G1_scaffold_20_25
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28148..30772)
DNA (2625bp) protein (875aa)
Copper-(Or silver)-translocating P-type ATPase {ECO:0000313|EMBL:CBK78447.1}; EC=3.6.3.4 {ECO:0000313|EMBL:CBK78447.1};; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
copper-(or silver)-translocating P-type ATPase (EC:3.6.3.4)
Copper-(Or silver)-translocating P-type ATPase n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DL73_CLOSC
L3_079_127G1_scaffold_20_26
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31147..32529)
DNA (1383bp) protein (461aa)
Putative efflux protein, MATE family n=1 Tax=butyrate-producing bacterium SM4/1 RepID=D4MPN4_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL35720.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_079_127G1_scaffold_20_27
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32894..33352
DNA (459bp) protein (153aa)
Transcriptional regulator, AsnC family n=1 Tax=butyrate-producing bacterium SM4/1 RepID=D4MPN5_9FIRM
transcriptional regulator, AsnC family
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:CBL35721.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_079_127G1_scaffold_20_28
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33582..33941
DNA (360bp) protein (120aa)
Phage-related protein n=1 Tax=butyrate-producing bacterium SM4/1 RepID=D4MPN6_9FIRM
hypothetical protein
Phage-related protein {ECO:0000313|EMBL:CBL35722.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_079_127G1_scaffold_20_29
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33947..34234
DNA (288bp) protein (96aa)
Predicted transcriptional regulator with C-terminal CBS domains n=3 Tax=Clostridiales RepID=D4MPN7_9FIRM
Predicted transcriptional regulator with C-terminal CBS domains
Predicted transcriptional regulator with C-terminal CBS domains {ECO:0000313|EMBL:CBK78408.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_079_127G1_scaffold_20_30
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34395..34634
DNA (240bp) protein (80aa)
M protein trans-acting positive regulator (MGA) HTH domain protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5LUR5_9CLOT
M protein trans-acting positive regulator (MGA) HTH domain protein {ECO:0000313|EMBL:CCY81119.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
Transcriptional regulators
Displaying items 1-30 of 278 in total

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