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L3_079_363G1_scaffold_270

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Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_363G1_scaffold_270_1
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(166..1053)
DNA (888bp) protein (296aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7JXF5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN47697.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Small-conductance mechanosensitive channel
L3_079_363G1_scaffold_270_2
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1056..1913)
DNA (858bp) protein (286aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=A7B0N3_RUMGN
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
conserved hypothetical protein TIGR00726
L3_079_363G1_scaffold_270_3
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1938..2291)
DNA (354bp) protein (118aa)
UPF0102 protein RUMGNA_01110 n=4 Tax=Clostridiales RepID=A7B0N4_RUMGN
UPF0102 protein HMPREF1201_01124 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
conserved hypothetical protein TIGR00252
L3_079_363G1_scaffold_270_4
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2327..3079)
DNA (753bp) protein (251aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=2 Tax=Lachnospiraceae RepID=A7B0N5_RUMGN
L3_079_363G1_scaffold_270_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3104..3661)
DNA (558bp) protein (186aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=4 Tax=Clostridiales RepID=A7B0N6_RUMGN
L3_079_363G1_scaffold_270_6
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3680..4546)
DNA (867bp) protein (289aa)
Ribosome biogenesis GTPase A n=3 Tax=Clostridiales RepID=A7B0N7_RUMGN
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ribosome biogenesis GTP-binding protein YlqF
L3_079_363G1_scaffold_270_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4561..5169)
DNA (609bp) protein (203aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0N8_RUMGN
L3_079_363G1_scaffold_270_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5235..5582)
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=4 Tax=Clostridiales RepID=A7B0N9_RUMGN
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ribosomal protein L19, bacterial type
L3_079_363G1_scaffold_270_9
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5686..6444)
DNA (759bp) protein (253aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Lachnospiraceae RepID=A7B0P0_RUMGN
L3_079_363G1_scaffold_270_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6476..6994)
DNA (519bp) protein (173aa)
Ribosome maturation factor RimM n=2 Tax=Ruminococcus gnavus RepID=A7B0P1_RUMGN
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
16S rRNA processing protein RimM
L3_079_363G1_scaffold_270_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7071..7301)
DNA (231bp) protein (77aa)
UPF0109 protein RUMGNA_01118 n=3 Tax=Lachnospiraceae RepID=A7B0P2_RUMGN
UPF0109 protein HMPREF1201_01132 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
RNA-binding protein (KH domain)
L3_079_363G1_scaffold_270_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7326..7571)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=4 Tax=Clostridiales RepID=A7B0P3_RUMGN
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
SSU ribosomal protein S16P
L3_079_363G1_scaffold_270_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7617..8969)
DNA (1353bp) protein (451aa)
Signal recognition particle protein n=3 Tax=Clostridiales RepID=A7B0P4_RUMGN
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
signal recognition particle protein
L3_079_363G1_scaffold_270_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8971..9327)
DNA (357bp) protein (119aa)
Helix-turn-helix protein, YlxM/p13 family n=3 Tax=Lachnospiraceae RepID=A7B0P5_RUMGN
UPF0122 protein HMPREF1201_01135 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_079_363G1_scaffold_270_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9412..10308)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BW53_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD18995.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Subtilisin-like serine proteases
L3_079_363G1_scaffold_270_16
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10414..10680)
DNA (267bp) protein (89aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=A7B0U9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47713.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_079_363G1_scaffold_270_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11069..11203)
DNA (135bp) protein (45aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B0V2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47715.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_079_363G1_scaffold_270_18
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11335..11859
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7JWW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN47716.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_079_363G1_scaffold_270_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11822..12076
DNA (255bp) protein (85aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TMN9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN47717.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_079_363G1_scaffold_270_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12161..12919
DNA (759bp) protein (253aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Pseudouridylate synthase (EC:5.4.99.12)
tRNA pseudouridine synthase A n=4 Tax=Clostridiales RepID=A7B0V5_RUMGN
L3_079_363G1_scaffold_270_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12919..13752
DNA (834bp) protein (278aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7JWW4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN47719.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted membrane protein
L3_079_363G1_scaffold_270_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13754..14215)
DNA (462bp) protein (154aa)
pilD; type IV prepilin-like leader peptidase PilD (EC:3.4.23.43)
Peptidase, A24 family n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0V7_RUMGN
Peptidase, A24 family {ECO:0000313|EMBL:EDN78446.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_079_363G1_scaffold_270_23
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14212..15033)
DNA (822bp) protein (274aa)
PHP domain protein n=4 Tax=Clostridiales RepID=A7B0V8_RUMGN
PHP domain protein {ECO:0000313|EMBL:CCZ66954.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted metal-dependent phosphoesterases (PHP family)
L3_079_363G1_scaffold_270_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15187..16194)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=A7B0V9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN78448.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_079_363G1_scaffold_270_25
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16739..17299)
DNA (561bp) protein (187aa)
ATP:cob(I)alamin adenosyltransferase n=4 Tax=Clostridiales RepID=A7B0W0_RUMGN
ATP:cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:CCZ66956.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ATP:cob(I)alamin adenosyltransferase
L3_079_363G1_scaffold_270_26
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17330..17659)
DNA (330bp) protein (110aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=A7B0W1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ66957.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_079_363G1_scaffold_270_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17656..19470)
DNA (1815bp) protein (605aa)
Diol dehydratase / glycerol dehydratase reactivase large subunit n=4 Tax=Clostridiales RepID=A7B0W2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47725.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
diol/glycerol dehydratase reactivating factor large subunit
L3_079_363G1_scaffold_270_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19467..19859)
DNA (393bp) protein (131aa)
Dehydratase small subunit n=2 Tax=Lachnospiraceae RepID=A7B0W3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47726.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
dehydratase small subunit
L3_079_363G1_scaffold_270_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19860..20528)
DNA (669bp) protein (223aa)
Glycerol dehydratase, medium subunit {ECO:0000313|EMBL:EDN78453.1}; EC=4.2.1.30 {ECO:0000313|EMBL:EDN78453.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Glycerol dehydratase, medium subunit n=2 Tax=Lachnospiraceae RepID=A7B0W4_RUMGN
dehydratase medium subunit
L3_079_363G1_scaffold_270_30
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20540..22204)
DNA (1665bp) protein (555aa)
Glycerol dehydratase large subunit n=3 Tax=Clostridiales RepID=F7JWX3_9FIRM
Glycerol dehydratase large subunit {ECO:0000313|EMBL:ETD19010.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
dehydratase large subunit
Displaying items 1-30 of 66 in total

View Taxonomy