ggKbase home page

L3_079_363G1_scaffold_328

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_363G1_scaffold_328_1
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2..346
DNA (345bp) protein (115aa)
Putative uncharacterized protein n=1 Tax=Bacteroides sp. 2_1_56FAA RepID=F7LWY5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EYA17305.1}; TaxID=1339337 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 1007-1-F #3.;"
L3_079_363G1_scaffold_328_2
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

969..1922
DNA (954bp) protein (318aa)
putative 5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=272559 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC; 9343).;"
Methylenetetrahydrofolate reductase n=14 Tax=Bacteroides RepID=E1WNU3_BACF6
L3_079_363G1_scaffold_328_3
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1926..3035
DNA (1110bp) protein (370aa)
DNA polymerase III, delta' subunit n=6 Tax=Bacteroides RepID=C6IDP1_9BACE
putative DNA polymerase III delta subunit
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EXY63904.1}; TaxID=1339289 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3986 N(B)19.;"
L3_079_363G1_scaffold_328_4
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3052..4506
DNA (1455bp) protein (485aa)
Uncharacterized protein n=5 Tax=Bacteroides fragilis RepID=Q5L8K0_BACFN
hypothetical protein
Polymerase suppressor protein 1/PSP1 family protein {ECO:0000313|EMBL:EYB07759.1}; TaxID=1339310 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3783N1-6.;"
L3_079_363G1_scaffold_328_5
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4514..4954
DNA (441bp) protein (147aa)
Uncharacterized protein n=12 Tax=Bacteroides RepID=Q64NU5_BACFR
gldH; putative gliding motility protein
Gliding motility-associated lipoGldH family protein {ECO:0000313|EMBL:EXZ51999.1}; TaxID=1339299 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3397 T14.;"
L3_079_363G1_scaffold_328_6
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4949..6406)
DNA (1458bp) protein (486aa)
Rod shape-determining protein RodA n=12 Tax=Bacteroides RepID=Q64NU4_BACFR
rod shape-determining protein RodA
Rod shape-determining protein RodA {ECO:0000313|EMBL:EIY40992.1}; TaxID=997878 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL03T00C08.;"
L3_079_363G1_scaffold_328_7
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6387..8243)
DNA (1857bp) protein (619aa)
Penicillin-binding protein 2 n=4 Tax=Bacteroides RepID=D1JX37_9BACE
Penicillin-binding protein 2 {ECO:0000313|EMBL:EYB07762.1}; TaxID=1339310 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3783N1-6.;"
mrdA; putative penicillin-binding protein 2
L3_079_363G1_scaffold_328_8
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8246..8743)
DNA (498bp) protein (166aa)
Uncharacterized protein n=7 Tax=Bacteroides RepID=Q64NU2_BACFR
hypothetical protein
Rod shape-determining protein MreD {ECO:0000313|EMBL:EXZ26694.1}; TaxID=1339327 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. S36L11.;"
L3_079_363G1_scaffold_328_9
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8740..9585)
DNA (846bp) protein (282aa)
Cell shape-determining protein MreC n=11 Tax=Bacteroides RepID=E1WNV0_BACF6
putative rod shape-determining protein MreC
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1339299 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3397 T14.;"
L3_079_363G1_scaffold_328_10
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9687..10709)
DNA (1023bp) protein (341aa)
Rod shape-determining protein MreB n=17 Tax=Bacteroides RepID=Q64NU0_BACFR
mreB; putative rod-shape determining protein
MreB/Mrl family cell shape determining protein {ECO:0000313|EMBL:EKA79681.1}; TaxID=1073388 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 616.;"
L3_079_363G1_scaffold_328_11
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10784..12307)
DNA (1524bp) protein (508aa)
Phosphoribosylaminoimidazole carboxy formyl formyltransferase n=14 Tax=Bacteroides RepID=Q64NT9_BACFR
phosphoribosylaminoimidazole carboxy formyl formyltransferase
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=997883 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL07T12C05.;"
L3_079_363G1_scaffold_328_12
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12459..14492)
DNA (2034bp) protein (678aa)
Peptidase family M13 n=4 Tax=Bacteroides RepID=D1JX42_9BACE
putative endothelin-converting enzyme
Peptidase M13 family protein {ECO:0000313|EMBL:EXZ76745.1}; TaxID=1339335 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3-F-2 #6.;"
L3_079_363G1_scaffold_328_13
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14508..16463)
DNA (1956bp) protein (652aa)
Heme ABC exporter, ATP-binding protein CcmA {ECO:0000313|EMBL:EXY88648.1}; EC=3.6.3.41 {ECO:0000313|EMBL:EXY88648.1};; TaxID=1339316 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3998T(B)3.;"
ABC transporter ATP-binding protein n=12 Tax=Bacteroides RepID=Q64NT7_BACFR
putative ATP-binding component of ABC transporter
L3_079_363G1_scaffold_328_14
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16691..19081)
DNA (2391bp) protein (797aa)
Uncharacterized protein n=2 Tax=Bacteroides fragilis RepID=I8XT21_BACFG
Uncharacterized protein {ECO:0000313|EMBL:EIY40984.1}; TaxID=997878 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL03T00C08.;"
hypothetical protein
L3_079_363G1_scaffold_328_15
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19291..19458)
DNA (168bp) protein (56aa)
Uncharacterized protein n=6 Tax=Bacteroides RepID=I3HKR4_BACFG
Uncharacterized protein {ECO:0000313|EMBL:EYB07770.1}; TaxID=1339310 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3783N1-6.;"
hypothetical protein
L3_079_363G1_scaffold_328_16
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19958..20860)
DNA (903bp) protein (301aa)
Uncharacterized protein n=11 Tax=Bacteroides RepID=E1WNV6_BACF6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKA85999.1}; TaxID=1073387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 615.;"
L3_079_363G1_scaffold_328_17
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20987..23338)
DNA (2352bp) protein (784aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis HMW 615 RepID=K1GRB5_BACFG
Uncharacterized protein {ECO:0000313|EMBL:EKA85998.1}; TaxID=1073387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 615.;"
hypothetical protein
L3_079_363G1_scaffold_328_18
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23366..27910)
DNA (4545bp) protein (1515aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 2_1_16 RepID=D1JX48_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EXY82673.1}; TaxID=1339283 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3996 N(B) 6.;"
hypothetical protein
L3_079_363G1_scaffold_328_19
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28024..30324)
DNA (2301bp) protein (767aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis HMW 615 RepID=K1G340_BACFG
Response regulator {ECO:0000313|EMBL:EXZ81412.1}; TaxID=1339273 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. B1 (UDC16-1).;"
putative two-component system sensor histidine kinase/response regulator fusion protein
L3_079_363G1_scaffold_328_20
Bacteroides fragilis CAG:47, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30328..31653)
DNA (1326bp) protein (442aa)
MATE efflux family protein n=9 Tax=Bacteroides RepID=C6IDQ9_9BACE
putative transmembrane transport efflux protein
Putative multidrug efflux protein {ECO:0000313|EMBL:CDD44931.1}; TaxID=1263046 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides fragilis CAG:47.;"
L3_079_363G1_scaffold_328_21
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31637..32899)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=11 Tax=Bacteroides RepID=C6IDR0_9BACE
putative protease
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:EYE41908.1}; TaxID=1339329 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. S23L17.;"
L3_079_363G1_scaffold_328_22
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32902..33741)
DNA (840bp) protein (280aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1339299 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3397 T14.;"
Peptidyl-prolyl cis-trans isomerase n=12 Tax=Bacteroides RepID=E1WNW2_BACF6
putative peptidyl-prolyl cis-trans isomerase
L3_079_363G1_scaffold_328_23
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33835..35178
DNA (1344bp) protein (448aa)
Two-component system response regulator n=10 Tax=Bacteroides RepID=Q64NS6_BACFR
putative two-component response regulator transcriptional regulatory protein
AAA domain family protein {ECO:0000313|EMBL:EYE43161.1}; TaxID=1339318 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. S6L5.;"
L3_079_363G1_scaffold_328_24
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35433..35675
DNA (243bp) protein (81aa)
Uncharacterized protein n=8 Tax=Bacteroides RepID=Q5L8I0_BACFN
putative lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:EXY88668.1}; TaxID=1339316 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3998T(B)3.;"
L3_079_363G1_scaffold_328_25
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35824..36489)
DNA (666bp) protein (222aa)
Ribosomal large subunit pseudouridine synthase D n=12 Tax=Bacteroides RepID=Q64NS3_BACFR
putative ribosomal large subunit pseudouridine synthase
RluA family pseudouridine synthase {ECO:0000313|EMBL:EIY88774.1}; TaxID=997883 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL07T12C05.;"
L3_079_363G1_scaffold_328_26
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36498..37244)
DNA (747bp) protein (249aa)
fabG; putative 3-oxoacyl-[acyl-carrier protein] reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:EYB07781.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EYB07781.1};; TaxID=1339310 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3783N1-6.;"
3-oxoacyl-[acyl-carrier protein] reductase n=12 Tax=Bacteroides RepID=Q64NS2_BACFR
L3_079_363G1_scaffold_328_27
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37257..37853)
DNA (597bp) protein (199aa)
Transcriptional regulator n=14 Tax=Bacteroides RepID=Q64NS1_BACFR
putative TetR-family transcriptional regulator
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:EYA17332.1}; TaxID=1339337 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 1007-1-F #3.;"
L3_079_363G1_scaffold_328_28
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38655..40178)
DNA (1524bp) protein (508aa)
Uncharacterized protein n=2 Tax=Bacteroides fragilis RepID=I3HKQ1_BACFG
Uncharacterized protein {ECO:0000313|EMBL:EIY88777.1}; TaxID=997883 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL07T12C05.;"
hypothetical protein
L3_079_363G1_scaffold_328_29
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(40311..41084)
DNA (774bp) protein (258aa)
Uncharacterized protein n=3 Tax=Bacteroides fragilis RepID=I3HKQ0_BACFG
putative transmembrane protein
ABC-2 transporter family protein {ECO:0000313|EMBL:EXZ76762.1}; TaxID=1339335 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3-F-2 #6.;"
L3_079_363G1_scaffold_328_30
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(41081..41983)
DNA (903bp) protein (301aa)
Uncharacterized protein n=7 Tax=Bacteroides fragilis RepID=I3HKP9_BACFG
putative ABC transporter transmembrane component
ABC transporter family protein {ECO:0000313|EMBL:EXY39140.1}; TaxID=1339308 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3774 T13.;"
Displaying items 1-30 of 43 in total

View Taxonomy