ggKbase home page

L3_079_363G1_scaffold_378

Search features with annotation key words

Displaying items 1-30 of 103 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_363G1_scaffold_378_1
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

786..1553
DNA (768bp) protein (256aa)
Sugar fermentation stimulation protein homolog n=2 Tax=Oscillibacter RepID=U2SQ14_9FIRM
Sugar fermentation stimulation protein homolog {ECO:0000256|HAMAP-Rule:MF_00095}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
sugar fermentation stimulation protein homolog
L3_079_363G1_scaffold_378_2
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1566..2138
DNA (573bp) protein (191aa)
Putative manganese efflux pump MntP n=2 Tax=Oscillibacter RepID=U2SGM5_9FIRM
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_079_363G1_scaffold_378_3
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2213..2362)
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TYA7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC72896.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_079_363G1_scaffold_378_4
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2444..3535)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2QP13_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK68565.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
putative surface layer protein
L3_079_363G1_scaffold_378_5
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3562..4191)
DNA (630bp) protein (210aa)
Redox-sensing transcriptional repressor Rex n=2 Tax=Oscillibacter RepID=U2R725_9FIRM
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
rex; redox-sensing transcriptional repressor Rex
L3_079_363G1_scaffold_378_6
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4720..4944)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6T579_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC68513.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_079_363G1_scaffold_378_7
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4941..6119)
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M2R8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS64971.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
integrase family protein
L3_079_363G1_scaffold_378_8
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6248..7456)
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A7C4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37779.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
integrase family protein
L3_079_363G1_scaffold_378_9
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(7460..8770)
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZHX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14030.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
Relaxase/mobilization nuclease family protein
L3_079_363G1_scaffold_378_10
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8912..9088)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M2A5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS64968.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_079_363G1_scaffold_378_11
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9501..10022
DNA (522bp) protein (174aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZL9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63726.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_079_363G1_scaffold_378_12
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10039..11010
DNA (972bp) protein (324aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63725.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
RNA polymerase sigma-32 subunit RpoH
L3_079_363G1_scaffold_378_13
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11842..13434
DNA (1593bp) protein (531aa)
ABC transporter substrate-binding protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B6A3DC
dipeptide ABC transporter dipeptide-binding protein
Tax=RBG_13_Deltaproteobacteria_43_22_curated
L3_079_363G1_scaffold_378_14
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13465..14391
DNA (927bp) protein (309aa)
Dipeptide transport system permease DppB id=4526369 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type dipeptide/oligopeptide/nickel transport system, permease component
Tax=RBG_13_Deltaproteobacteria_43_22_curated
L3_079_363G1_scaffold_378_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14396..15268
DNA (873bp) protein (291aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component id=4621967 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
L3_079_363G1_scaffold_378_16
Brevibacillus brevis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15268..16239
DNA (972bp) protein (324aa)
ABC transporter ATP-binding protein n=1 Tax=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) RepID=C0ZB25_BREBN
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAH42984.1}; TaxID=358681 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599).;"
L3_079_363G1_scaffold_378_17
Jeotgalibacillus sp. D5, Jeotgalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16236..17234
DNA (999bp) protein (333aa)
Oligopeptide ABC transporter ATP-binding protein n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YEC8_DICT6
glutathione import ATP-binding protein GsiA
Glutathione import ATP-binding protein GsiA {ECO:0000313|EMBL:AJD90721.1}; TaxID=1508404 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Jeotgalibacillus.;" source="Jeotgalibacillus sp. D5.;"
L3_079_363G1_scaffold_378_18
BJP_IG2102_ACD39_51_10, ACD39, Bacteria

Not on your lists

17222..17977
DNA (756bp) protein (252aa)
Purine nucleoside phosphorylase, putative id=4735975 bin=GWC2_ACD39_50_8 species=Perkinsus marinus genus=Perkinsus taxon_order=Perkinsida taxon_class=unknown phylum=unknown tax=GWC2_ACD39_50_8 organism_group=ACD39
uridine phosphorylase
Tax=BJP_IG2102_ACD39_51_10
L3_079_363G1_scaffold_378_19
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17979..19322
DNA (1344bp) protein (448aa)
MmgE/PrpD n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMD3_KORVE
Uncharacterized protein {ECO:0000313|EMBL:ETR79134.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
MmgE/PrpD
L3_079_363G1_scaffold_378_20
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

Not on your lists

19319..20581
DNA (1263bp) protein (421aa)
3-isopropylmalate dehydratase large subunit 1 n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=LEUC1_METKA
LeuC_1; 3-isopropylmalate dehydratase large subunit
Tax=RBG_13_Chloroflexi_46_14_curated
L3_079_363G1_scaffold_378_21
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

Not on your lists

20578..21078
DNA (501bp) protein (167aa)
leuD1; 3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
Methanogen homoaconitase small subunit n=1 Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PX67_METTM
Tax=RBG_13_Aminicenantes_63_10_curated
L3_079_363G1_scaffold_378_22
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21080..22138
DNA (1059bp) protein (353aa)
isopropylmalate/isohomocitrate dehydrogenase (EC:1.1.1.83)
Isopropylmalate/isohomocitrate dehydrogenase n=2 Tax=Rhodococcus RepID=K8XEP5_RHOOP
Tax=RBG_13_Deltaproteobacteria_43_22_curated
L3_079_363G1_scaffold_378_23
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

22159..23187
DNA (1029bp) protein (343aa)
AraC family transcriptional regulator (EC:5.3.1.23)
Putative translation initiation factor EIF-2B subunit 1 id=3922002 bin=GWB1_Spirochaetes_59_5 species=Clostridium tetani genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=GWB1_Spirochaetes_59_5_curated
L3_079_363G1_scaffold_378_24
Saccharomonospora cyanea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23357..24067
DNA (711bp) protein (237aa)
Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase n=1 Tax=Saccharomonospora cyanea NA-134 RepID=H5XM08_9PSEU
Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase {ECO:0000313|EMBL:EHR63087.1}; TaxID=882082 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora cyanea NA-134.;"
ribulose-5-phosphate 4-epimerase-like epimerase or aldolase
L3_079_363G1_scaffold_378_25
BJP_IG2158_Anaerolineales_38_74, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

24069..24944
DNA (876bp) protein (292aa)
Transcriptional regulator, RpiR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSQ6_9FIRM
putative transcriptional regulator, GlvR family
Tax=BJP_IG2158_Anaerolineales_38_74
L3_079_363G1_scaffold_378_26
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24996..26075
DNA (1080bp) protein (360aa)
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CWC1_9CLOT
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein {ECO:0000313|EMBL:EEG56604.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
mandelate racemase/muconate lactonizing-like protein
L3_079_363G1_scaffold_378_27
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26099..27289
DNA (1191bp) protein (397aa)
bdh; NADH-dependent butanol dehydrogenase (EC:1.1.1.-)
Putative NADH-dependent butanol dehydrogenase A n=2 Tax=Oscillibacter RepID=U2R3N9_9FIRM
Putative NADH-dependent butanol dehydrogenase A {ECO:0000313|EMBL:ERK63139.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L3_079_363G1_scaffold_378_28
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

27296..27523
DNA (228bp) protein (76aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KWB2_OSCVS
pyruvate-ferredoxin oxidoreductase
L3_079_363G1_scaffold_378_29
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27743..30772
DNA (3030bp) protein (1010aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
pyruvate-ferredoxin (flavodoxin) oxidoreductase (EC:1.2.7.-)
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KWB2_OSCVS
L3_079_363G1_scaffold_378_30
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31036..32493
DNA (1458bp) protein (486aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=N2AZP2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ29889.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
divergent AAA domain-containing protein
Displaying items 1-30 of 103 in total

View Taxonomy