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L3_079_363G1_scaffold_2014

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_363G1_scaffold_2014_1
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..1367)
DNA (1365bp) protein (455aa)
TOBE domain protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FMY6_9FIRM
TOBE domain protein {ECO:0000313|EMBL:EEG96051.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L3_079_363G1_scaffold_2014_2
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1454..2215)
DNA (762bp) protein (254aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FMY5_9FIRM
L3_079_363G1_scaffold_2014_3
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2279..3133)
DNA (855bp) protein (285aa)
Ribosome biogenesis GTPase A n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FMY4_9FIRM
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
ribosome biogenesis GTP-binding protein YlqF
L3_079_363G1_scaffold_2014_4
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3152..3733)
DNA (582bp) protein (194aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Uncharacterized protein n=2 Tax=Roseburia RepID=R5HLD8_9FIRM
signal peptidase I
L3_079_363G1_scaffold_2014_5
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3856..4704)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HQL2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30439.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
sortase, SrtB family
L3_079_363G1_scaffold_2014_6
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4705..5694)
DNA (990bp) protein (330aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FMY1_9FIRM
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EEG96046.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
cell envelope-related function transcriptional attenuator common domain
L3_079_363G1_scaffold_2014_7
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5804..6481)
DNA (678bp) protein (226aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FMY0_9FIRM
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EEG96045.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L3_079_363G1_scaffold_2014_8
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6697..7050)
DNA (354bp) protein (118aa)
50S ribosomal protein L19 n=2 Tax=Roseburia RepID=C0FMX8_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
rplS; 50S ribosomal protein L19
L3_079_363G1_scaffold_2014_9
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7174..7407)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I0Z7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30441.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L3_079_363G1_scaffold_2014_10
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7480..8205)
DNA (726bp) protein (242aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I0D3_9FIRM
L3_079_363G1_scaffold_2014_11
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8240..8761)
DNA (522bp) protein (174aa)
Ribosome maturation factor RimM n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HLE2_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
16S rRNA processing protein RimM
L3_079_363G1_scaffold_2014_12
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8849..9079)
DNA (231bp) protein (77aa)
UPF0109 protein ROSEINA2194_00062 n=2 Tax=Roseburia RepID=C0FMW8_9FIRM
UPF0109 protein ROSEINA2194_00062 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L3_079_363G1_scaffold_2014_13
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9098..9256)
DNA (159bp) protein (53aa)
30S ribosomal protein S16 n=2 Tax=Roseburia RepID=C0FMU7_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
rpsP; 30S ribosomal protein S16
Displaying 13 items

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