ggKbase home page

L3_079_363G1_scaffold_1540

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_363G1_scaffold_1540_1
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..1499
DNA (1497bp) protein (499aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
Pyruvate kinase n=2 Tax=Bifidobacterium RepID=C0BSW4_9BIFI
pyk; pyruvate kinase
L3_079_363G1_scaffold_1540_2
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1909..2133)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Bifidobacterium animalis subsp. animalis (strain ATCC 25527 / DSM 20104 / JCM 1190 / R101-8) RepID=I1WBU1_BIFAR
Bifidobacterium kashiwanohense JCM 15439 = DSM 21854 DNA, complete genome {ECO:0000313|EMBL:BAQ28910.1}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
hypothetical protein
L3_079_363G1_scaffold_1540_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2196..2360
DNA (165bp) protein (55aa)
Transposase n=2 Tax=Bifidobacterium longum RepID=E8MIN9_BIFL2
Transposase {ECO:0000313|EMBL:KEY30528.1}; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
transposase
L3_079_363G1_scaffold_1540_4
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2440..2646)
DNA (207bp) protein (69aa)
Uncharacterized protein {ECO:0000313|EMBL:KFI66617.1}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
L3_079_363G1_scaffold_1540_5
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2900..4159
DNA (1260bp) protein (420aa)
metC1; cystathionine beta-lyase (EC:2.5.1.48)
MetC1 Cystathionine beta-lyase n=2 Tax=Bifidobacterium dentium RepID=D2Q974_BIFDB
Bifidobacterium kashiwanohense JCM 15439 = DSM 21854 DNA, complete genome {ECO:0000313|EMBL:BAQ28912.1}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
L3_079_363G1_scaffold_1540_6
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4192..5013
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P2Z5_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC15069.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
amino acid ABC transporter ATP-binding protein
L3_079_363G1_scaffold_1540_7
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5058..5885
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6NV48_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC15070.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
putative amino acid ABC transporter substrate binding component
L3_079_363G1_scaffold_1540_8
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5970..6632
DNA (663bp) protein (221aa)
Permease protein of ABC transporter system n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P967_9BIFI
Cysteine ABC transporter permease {ECO:0000313|EMBL:KEF28411.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
ABC transporter permease
L3_079_363G1_scaffold_1540_9
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7114..7641
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6PZF6_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:KEF28410.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
ATP-dependent DNA helicase
L3_079_363G1_scaffold_1540_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7996..11115
DNA (3120bp) protein (1040aa)
Type I site-specific deoxyribonuclease, HsdR family {ECO:0000313|EMBL:CBK69880.1}; EC=3.1.21.3 {ECO:0000313|EMBL:CBK69880.1};; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
type I site-specific deoxyribonuclease, HsdR family (EC:3.1.21.3)
Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Bifidobacterium longum subsp. longum 1-6B RepID=I3BCG9_BIFLN
L3_079_363G1_scaffold_1540_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11141..12649
DNA (1509bp) protein (503aa)
Type I restriction-modification system methyltransferase subunit (EC:2.1.1.72)
Type I restriction-modification system, DNA-methyltransferase subunit M {ECO:0000313|EMBL:ESV34031.1}; EC=2.1.1.72 {ECO:0000313|EMBL:ESV34031.1};; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
Type I restriction-modification system methyltransferase subunit n=4 Tax=Bifidobacterium longum RepID=D6DBK8_BIFLN
L3_079_363G1_scaffold_1540_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12639..13184
DNA (546bp) protein (182aa)
Type I restriction-modification system, specificity subunit S {ECO:0000313|EMBL:ESV34030.1}; EC=3.1.21.3 {ECO:0000313|EMBL:ESV34030.1};; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
Type I restriction-modification system, specificity subunit S n=2 Tax=Bifidobacterium longum RepID=V6XXK4_BIFLN
restriction modification system DNA specificity subunit
Displaying 12 items

View Taxonomy