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L3_082_000G1_scaffold_194

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_000G1_scaffold_194_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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258..809
DNA (552bp) protein (184aa)
Transposase for insertion sequence elementIS1086 n=3 Tax=Bifidobacterium bifidum RepID=I3WKJ8_BIFBI
transposase for insertion sequence elementIS1086
Transposase for insertion sequence elementIS1086 {ECO:0000313|EMBL:AFL05411.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_082_000G1_scaffold_194_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(995..2122)
DNA (1128bp) protein (376aa)
ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium bifidum RepID=E4VC95_BIFBI
msmX; putative multiple sugar-binding transportATP-binding protein
Putative multiple sugar-binding transportATP-binding protein {ECO:0000313|EMBL:AFL05412.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_082_000G1_scaffold_194_3
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2574..3485)
DNA (912bp) protein (304aa)
CTP synthase (UTP-ammonia lyase) n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H7Y6_9BIFI
CTP synthase (UTP-ammonia lyase) {ECO:0000313|EMBL:CDB22367.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
CTP synthase
L3_082_000G1_scaffold_194_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4037..6508
DNA (2472bp) protein (824aa)
Serine/threonine protein kinase {ECO:0000313|EMBL:KFI42111.1}; EC=2.7.11.1 {ECO:0000313|EMBL:KFI42111.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
pkwA; putative serine/threonine-protein kinase (EC:2.7.11.1)
Kinase domain protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DRT4_BIFBI
L3_082_000G1_scaffold_194_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6658..7632
DNA (975bp) protein (325aa)
DSBA oxidoreductase (EC:2.7.11.1)
DSBA oxidoreductase n=2 Tax=Bifidobacterium bifidum RepID=I3WKK2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE51213.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_082_000G1_scaffold_194_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8249..9748
DNA (1500bp) protein (500aa)
lytic transglycosylase n=1 Tax=Bifidobacterium bifidum RepID=UPI00036141EC
collagen-binding domain
Uncharacterized protein {ECO:0000313|EMBL:KFI42113.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_082_000G1_scaffold_194_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


9760..10710
DNA (951bp) protein (317aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Ribosomal RNA small subunit methyltransferase A n=5 Tax=Bifidobacterium RepID=E3ERH1_BIFBS
ksgA; Dimethyladenosine transferase
L3_082_000G1_scaffold_194_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10707..11747
DNA (1041bp) protein (347aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase n=1 Tax=Bifidobacterium bifidum RepID=UPI00036CFC68
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
L3_082_000G1_scaffold_194_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11789..12415
DNA (627bp) protein (209aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=I3WKK6_BIFBI
hypothetical protein
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:ERI84286.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ99025.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_082_000G1_scaffold_194_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12507..13934)
DNA (1428bp) protein (476aa)
RNA nucleotidyltransferase {ECO:0000313|EMBL:KFI42117.1}; EC=2.7.7.72 {ECO:0000313|EMBL:KFI42117.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
RNA nucleotidyltransferase (EC:2.7.7.72)
tRNA adenylyltransferase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CIC8_BIFBI
L3_082_000G1_scaffold_194_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14011..14664
DNA (654bp) protein (218aa)
Phosphohydrolase (Nudix family protein) n=8 Tax=Bifidobacterium RepID=E3ERH5_BIFBS
NTP pyrophosphohydrolase
NTP pyrophosphohydrolase {ECO:0000313|EMBL:AFL05421.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_082_000G1_scaffold_194_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14763..16937
DNA (2175bp) protein (725aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MX15_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF16523.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_082_000G1_scaffold_194_13
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16934..21370
DNA (4437bp) protein (1479aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GNN7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22871.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L3_082_000G1_scaffold_194_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21564..22730
DNA (1167bp) protein (389aa)
Thioredoxin-disulfide reductase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GEQ5_9BIFI
trxB2; Thioredoxin reductase
Thioredoxin-disulfide reductase {ECO:0000313|EMBL:CDB22870.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_082_000G1_scaffold_194_15
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23198..24562)
DNA (1365bp) protein (455aa)
Chromosome partitioning protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GMH3_9BIFI
Chromosome partitioning protein {ECO:0000313|EMBL:CDB22869.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
chromosome partitioning protein
L3_082_000G1_scaffold_194_16
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24566..25549)
DNA (984bp) protein (328aa)
Chromosome partitioning protein ParA n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GBQ1_9BIFI
Chromosome partitioning protein ParA {ECO:0000313|EMBL:CDB22868.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
parA; chromosome partitioning protein ParA
L3_082_000G1_scaffold_194_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26011..26709)
DNA (699bp) protein (233aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Ribosomal RNA small subunit methyltransferase G n=2 Tax=Bifidobacterium bifidum RepID=K2LFL7_BIFBI
gidB; methyl transferase
L3_082_000G1_scaffold_194_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26706..27236)
DNA (531bp) protein (177aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=K2HB25_BIFBI
hypothetical protein
R3H domain protein {ECO:0000313|EMBL:ERI84277.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ99034.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_082_000G1_scaffold_194_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27318..28328)
DNA (1011bp) protein (337aa)
Membrane protein n=5 Tax=Bifidobacterium RepID=I3WKL6_BIFBI
oxaA; membrane protein
Membrane protein insertase, YidC/Oxa1 family {ECO:0000313|EMBL:ERI84276.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ99035.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_082_000G1_scaffold_194_20
unknown

Not on your lists

28658..29074
DNA (417bp) protein (139aa)

This feature has no annotations

L3_082_000G1_scaffold_194_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(29031..29165)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=8 Tax=Bifidobacterium RepID=E3ERI4_BIFBS
rpmH; 50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_082_000G1_scaffold_194_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29518..31107
DNA (1590bp) protein (530aa)
Chromosomal replication initiator protein DnaA n=3 Tax=Bifidobacterium bifidum RepID=I3WFD5_BIFBI
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
dnaA; chromosomal replication initiator protein
L3_082_000G1_scaffold_194_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31708..32832
DNA (1125bp) protein (375aa)
dnaN; DnaN DNA polymerase III, beta chain (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
DNA polymerase III subunit beta n=7 Tax=Bifidobacterium RepID=E3ENC8_BIFBS
L3_082_000G1_scaffold_194_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32920..34233
DNA (1314bp) protein (438aa)
DNA replication and repair protein RecF n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFD8_BIFBI
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
recF; DNA replication and repair protein
L3_082_000G1_scaffold_194_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34230..34802
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2C1E2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42132.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L3_082_000G1_scaffold_194_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35004..37115
DNA (2112bp) protein (704aa)
gyrB; gyrB DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
DNA gyrase subunit B n=8 Tax=Bifidobacterium RepID=E3END1_BIFBS
L3_082_000G1_scaffold_194_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


37253..39985
DNA (2733bp) protein (911aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
DNA gyrase subunit A n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFE1_BIFBI
L3_082_000G1_scaffold_194_28
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40045..40602
DNA (558bp) protein (186aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=I3WFE2_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22857.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_082_000G1_scaffold_194_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(40966..41220)
DNA (255bp) protein (85aa)
Alpha-L-arabinofuranosidase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MHA2_BIFBI
Alpha-L-arabinofuranosidase {ECO:0000313|EMBL:EKF16542.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
alpha-L-arabinofuranosidase
L3_082_000G1_scaffold_194_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41299..41781
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CIB0_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42136.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
Displaying items 1-30 of 75 in total

View Taxonomy