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L3_082_000G1_scaffold_231

Search features with annotation key words

Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_000G1_scaffold_231_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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3..1463
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WIF0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04663.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_082_000G1_scaffold_231_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1469..2503
DNA (1035bp) protein (345aa)
Haloacid dehalogenase-like hydrolase (HAD superfamily) n=2 Tax=Bifidobacterium RepID=R6GAW2_9BIFI
Haloacid dehalogenase-like hydrolase (HAD superfamily) {ECO:0000313|EMBL:CDB22553.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
nagD; N-acetylglucosamine-6-phosphate deacetylase
L3_082_000G1_scaffold_231_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2584..2712
DNA (129bp) protein (43aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WIE8_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83743.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_082_000G1_scaffold_231_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2761..3519
DNA (759bp) protein (253aa)
Hemolysin A n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WIE7_BIFBI
tlyA; hemolysin A
Hemolysin A {ECO:0000313|EMBL:AFL04660.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_082_000G1_scaffold_231_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3555..4229)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DVE5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83741.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_082_000G1_scaffold_231_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4376..5029)
DNA (654bp) protein (218aa)
TrkA family potassium uptake protein n=7 Tax=Bifidobacterium RepID=E4NXC8_BIFBP
potassium uptake protein
TrkA family potassium uptake protein {ECO:0000313|EMBL:CDB22557.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_082_000G1_scaffold_231_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5210..6673)
DNA (1464bp) protein (488aa)
trkH; TrkH family potassium uptake protein (EC:3.6.3.14)
TrkH family potassium uptake protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GAW7_9BIFI
TrkH family potassium uptake protein {ECO:0000313|EMBL:CDB22558.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_082_000G1_scaffold_231_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6934..7908
DNA (975bp) protein (325aa)
ATP-NAD kinase (EC:2.7.1.23)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Probable inorganic polyphosphate/ATP-NAD kinase n=6 Tax=Bifidobacterium RepID=E3ER09_BIFBS
L3_082_000G1_scaffold_231_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7901..9667
DNA (1767bp) protein (589aa)
DNA repair protein RecN n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DQ85_BIFBI
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
recN; DNA repair protein
L3_082_000G1_scaffold_231_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9726..10385
DNA (660bp) protein (220aa)
Phosphatase n=2 Tax=Bifidobacterium bifidum RepID=I3WIE1_BIFBI
yqaB; phosphatase
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:ERI83736.1}; Putative hydrolyase {ECO:0000313|EMBL:BAQ98329.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_082_000G1_scaffold_231_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10506..10880
DNA (375bp) protein (125aa)
Transcriptional regulator, GntR family n=7 Tax=Bifidobacterium RepID=E3ER06_BIFBS
fatty acyl-responsive regulator
Fatty acyl-responsive regulator {ECO:0000313|EMBL:AFL04653.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_082_000G1_scaffold_231_12
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10976..11935
DNA (960bp) protein (320aa)
ABC transporter ATP-binding protein (EC:3.6.3.25)
ATP-binding protein of ABC transporter system n=2 Tax=Bifidobacterium RepID=E4NXC2_BIFBP
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:CDB22563.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_082_000G1_scaffold_231_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11919..12659
DNA (741bp) protein (247aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2IMH8_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE49950.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_082_000G1_scaffold_231_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12661..13371
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2ME11_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF15537.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_082_000G1_scaffold_231_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13425..14912)
DNA (1488bp) protein (496aa)
thrC; threonine synthase (EC:4.2.3.1)
Threonine synthase {ECO:0000313|EMBL:EKE49952.1}; EC=4.2.3.1 {ECO:0000313|EMBL:EKE49952.1};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ThrC Threonine synthase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXB9_BIFBP
L3_082_000G1_scaffold_231_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15108..16406
DNA (1299bp) protein (433aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=2 Tax=Bifidobacterium bifidum RepID=U2CGS3_BIFBI
L3_082_000G1_scaffold_231_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16403..16954
DNA (552bp) protein (184aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ER00_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53272.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_082_000G1_scaffold_231_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16951..17709
DNA (759bp) protein (253aa)
nadD; nicotinate-nucleotide adenylyltransferase NadD (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Probable nicotinate-nucleotide adenylyltransferase n=3 Tax=Bifidobacterium RepID=E4NXB6_BIFBP
L3_082_000G1_scaffold_231_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17844..18866
DNA (1023bp) protein (341aa)
ribose-phosphate pyrophosphokinase PrsA (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Ribose-phosphate pyrophosphokinase n=3 Tax=Bifidobacterium bifidum RepID=E4NXB5_BIFBP
L3_082_000G1_scaffold_231_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19124..20458
DNA (1335bp) protein (445aa)
glmU; UDP-N-acetylglucosaminediphosphorylase/glucosamine-1-phosphateN-acetyl transferase (EC:2.7.7.23)
Bifunctional protein GlmU n=4 Tax=Bifidobacterium bifidum RepID=I3WID1_BIFBI
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_082_000G1_scaffold_231_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20463..20900
DNA (438bp) protein (146aa)
Ribosomal silencing factor RsfS n=3 Tax=Bifidobacterium RepID=K2M3P3_BIFBI
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
putative Iojap protein
L3_082_000G1_scaffold_231_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20878..21615
DNA (738bp) protein (246aa)
Phosphoglycerate mutase n=2 Tax=Bifidobacterium RepID=R6GAX7_9BIFI
Phosphoglycerate mutase {ECO:0000313|EMBL:CDB22573.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
gpm4; phosphoglycerate mutase
L3_082_000G1_scaffold_231_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21752..22195
DNA (444bp) protein (148aa)
Transmembrane protein n=8 Tax=Bifidobacterium RepID=E3EQZ4_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE49960.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_082_000G1_scaffold_231_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22256..23518
DNA (1263bp) protein (421aa)
putative cyclomaltodextrinase or neopullalanase (EC:3.2.1.135)
Alpha amylase, catalytic domain protein n=2 Tax=Bifidobacterium bifidum RepID=U2DQ67_BIFBI
Putative alpha-amylase {ECO:0000313|EMBL:BAQ98315.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_082_000G1_scaffold_231_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24202..25428)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HTW0_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE49962.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_082_000G1_scaffold_231_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25565..26260)
DNA (696bp) protein (232aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=E4VA52_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83719.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_082_000G1_scaffold_231_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26494..27405
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CI54_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI43146.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L3_082_000G1_scaffold_231_28
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27533..27937
DNA (405bp) protein (135aa)
Pyridoxamine 5'-phosphate oxidase pdxH n=4 Tax=Bifidobacterium RepID=E3EQY9_BIFBS
pyridoxamine 5'-phosphate oxidase
Pyridoxamine 5'-phosphate oxidase pdxH {ECO:0000313|EMBL:CDB22595.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_082_000G1_scaffold_231_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28117..28938)
DNA (822bp) protein (274aa)
Two-component response regulator n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I5G3_BIFBI
Two-component response regulator {ECO:0000313|EMBL:EKE49994.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
two-component response regulator
L3_082_000G1_scaffold_231_30
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29230..30249
DNA (1020bp) protein (340aa)
VanZ family protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H8P1_9BIFI
VanZ family protein {ECO:0000313|EMBL:CDB22597.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
VanZ family protein
Displaying items 1-30 of 85 in total

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