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L3_082_000G1_scaffold_349

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_000G1_scaffold_349_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(285..1433)
DNA (1149bp) protein (383aa)
XylR transcriptional regulator n=2 Tax=Clostridium butyricum RepID=B1R1M4_CLOBU
ROK family protein {ECO:0000313|EMBL:EEP56465.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
ROK family protein
L3_082_000G1_scaffold_349_2
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1506..3014)
DNA (1509bp) protein (503aa)
Xylulokinase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FTR1_CLOPA
Xylulokinase {ECO:0000313|EMBL:AJG99714.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
xylulokinase
L3_082_000G1_scaffold_349_3
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3173..4720)
DNA (1548bp) protein (516aa)
Response regulator receiver domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQN5_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:EDO62007.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
AraC family transcriptional regulator
L3_082_000G1_scaffold_349_4
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4750..6594)
DNA (1845bp) protein (615aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Clostridium termitidis CT1112 RepID=S0FKK4_9CLOT
integral membrane sensor signal transduction histidine kinase
L3_082_000G1_scaffold_349_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7054..8781)
DNA (1728bp) protein (576aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UYZ0_CLOBO
Methyl-accepting chemotaxis (MCP) signaling domain protein {ECO:0000313|EMBL:AIY79638.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
methyl-accepting chemotaxis sensory transducer
L3_082_000G1_scaffold_349_6
Anoxybacillus ayderensis, Anoxybacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8952..10139)
DNA (1188bp) protein (396aa)
L-arabinose ABC transporter (Permease) n=1 Tax=Geobacillus kaustophilus (strain HTA426) RepID=Q5KYP3_GEOKA
Strain AB04 contig000004, whole genome shotgun sequence {ECO:0000313|EMBL:KIP21640.1}; TaxID=265546 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Anoxybacillus.;" source="Anoxybacillus ayderensis.;"
araH; L-arabinose ABC transporter permease
L3_082_000G1_scaffold_349_7
Selenomonas artemidis, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(10139..11683)
DNA (1545bp) protein (515aa)
hypothetical protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI0003807AB3
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFW29669.1}; TaxID=749551 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas artemidis F0399.;"
ABC transporter related protein
L3_082_000G1_scaffold_349_8
Selenomonas sp. F0473, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(11990..13090)
DNA (1101bp) protein (367aa)
ABC transporter substrate-binding protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI000372818B
Uncharacterized protein {ECO:0000313|EMBL:EKU72029.1}; TaxID=999423 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. F0473.;"
sugar ABC transporter substrate-binding protein
L3_082_000G1_scaffold_349_9
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13375..13920)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EKK3_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM67428.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_082_000G1_scaffold_349_10
unknown

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comp(14229..14348)
DNA (120bp) protein (40aa)

This feature has no annotations

L3_082_000G1_scaffold_349_11
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14370..15398)
DNA (1029bp) protein (343aa)
UPF0053 protein YrkA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MN90_CLOSA
putative transporter
Putative transporter {ECO:0000313|EMBL:CDM68991.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_082_000G1_scaffold_349_12
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15502..16428)
DNA (927bp) protein (309aa)
DMT superfamily permease n=1 Tax=Clostridium saccharobutylicum DSM 13864 PF9_CLOSA">RepID=U5MPF9_CLOSA
DMT superfamily permease
DMT superfamily permease {ECO:0000313|EMBL:AGX41566.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_082_000G1_scaffold_349_13
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16683..17066
DNA (384bp) protein (128aa)
CBS domain containing protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MW61_9CLOT
CBS domain containing protein
CBS domain containing protein {ECO:0000313|EMBL:AGF58841.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_082_000G1_scaffold_349_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17131..19074)
DNA (1944bp) protein (648aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=2 Tax=Ruminococcus lactaris RepID=B5CPR3_9FIRM
L3_082_000G1_scaffold_349_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19218..19409)
DNA (192bp) protein (64aa)
garK; Glycerate kinase (EC:2.7.1.31)
Glycerate kinase {ECO:0000313|EMBL:CEJ99722.1}; EC=2.7.1.31 {ECO:0000313|EMBL:CEJ99722.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Glycerate kinase family protein n=1 Tax=Clostridium difficile DA00154 RepID=T3PTD2_CLODI
L3_082_000G1_scaffold_349_16
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19457..19756)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1LNN6_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF54445.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_082_000G1_scaffold_349_17
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20106..22271)
DNA (2166bp) protein (722aa)
Tex-like protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7MBF3_9CLOT
Tex-like protein {ECO:0000313|EMBL:EHI97480.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
Tex-like protein
L3_082_000G1_scaffold_349_18
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22671..23510)
DNA (840bp) protein (280aa)
CAAX amino terminal protease family n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U6W3_9CLOT
CAAX amino terminal protease family {ECO:0000313|EMBL:EKQ50914.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
CAAX amino terminal protease family
L3_082_000G1_scaffold_349_19
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23611..25095)
DNA (1485bp) protein (495aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Clostridium sp. DL-VIII RepID=G7MBF1_9CLOT
integral membrane sensor signal transduction histidine kinase
L3_082_000G1_scaffold_349_20
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25082..25780)
DNA (699bp) protein (233aa)
Response regulator GtcR n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MM11_CLOSA
gtcR1; response regulator GtcR
Response regulator GtcR {ECO:0000313|EMBL:AGX41558.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_082_000G1_scaffold_349_21
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25946..26278
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TVI4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ50917.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_082_000G1_scaffold_349_22
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26314..27720
DNA (1407bp) protein (469aa)
Aminopeptidase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLT6_CLOSA
aminopeptidase
Aminopeptidase {ECO:0000313|EMBL:AGX41555.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_082_000G1_scaffold_349_23
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27994..28437)
DNA (444bp) protein (148aa)
Heat shock protein, molecular chaperone n=4 Tax=Clostridium butyricum RepID=B1QS45_CLOBU
Heat shock protein, molecular chaperone {ECO:0000313|EMBL:KJZ86400.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hsp; 18 kDa heat shock protein Hsp
L3_082_000G1_scaffold_349_24
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28492..28929)
DNA (438bp) protein (146aa)
Heat shock protein, molecular chaperone n=4 Tax=Clostridium butyricum RepID=B1QS45_CLOBU
Heat shock protein, molecular chaperone {ECO:0000313|EMBL:KJZ86400.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
heat shock protein Hsp20
L3_082_000G1_scaffold_349_25
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29285..30262)
DNA (978bp) protein (326aa)
Peptide chain release factor 2 n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6SXG7_9CLOT
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
prfB; peptide chain release factor 2
L3_082_000G1_scaffold_349_26
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30597..33251)
DNA (2655bp) protein (885aa)
Protein translocase subunit SecA n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U6W5_9CLOT
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
secA; protein translocase subunit SecA
L3_082_000G1_scaffold_349_27
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33596..34129)
DNA (534bp) protein (178aa)
Ribosome-associated factor Y n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MQ53_CLOSA
ribosome-associated factor Y
Ribosome-associated factor Y {ECO:0000313|EMBL:AGX41552.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_082_000G1_scaffold_349_28
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34504..35199)
DNA (696bp) protein (232aa)
ComF protein n=2 Tax=Clostridium RepID=A6LQI9_CLOB8
ComF protein
ComF protein {ECO:0000313|EMBL:ABR32619.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_082_000G1_scaffold_349_29
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35172..36188)
DNA (1017bp) protein (339aa)
Superfamily II DNA/RNA helicase required for DNA uptake n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLT2_CLOSA
superfamily II DNA/RNA helicase required for DNA uptake
Superfamily II DNA/RNA helicase required for DNA uptake {ECO:0000313|EMBL:AGX41550.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_082_000G1_scaffold_349_30
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36209..38434)
DNA (2226bp) protein (742aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
Helicase, putative, RecD/TraA family n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6SXH1_9CLOT
recombinase D
Displaying items 1-30 of 66 in total

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