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L3_082_000G1_scaffold_454

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_000G1_scaffold_454_1
Coprococcus eutactus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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68..1024
DNA (957bp) protein (319aa)
Site-specific recombinase, phage integrase family n=2 Tax=root RepID=A8SQK3_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EDP26994.1}; TaxID=411474 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus eutactus ATCC 27759.;"
phage integrase family protein
L3_082_000G1_scaffold_454_2
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1094..1396
DNA (303bp) protein (101aa)
Addiction module antitoxin, RelB/DinJ family n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUH2_9FIRM
Addiction module antitoxin, RelB/DinJ family {ECO:0000313|EMBL:EEG93731.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
addiction module antitoxin, RelB/DinJ family
L3_082_000G1_scaffold_454_3
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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1396..1716
DNA (321bp) protein (107aa)
Plasmid stabilisation system protein n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GUW6_9FIRM
Plasmid stabilisation system protein.
Plasmid stabilisation system protein {ECO:0000313|EMBL:CBL41608.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_082_000G1_scaffold_454_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1756..1950
DNA (195bp) protein (65aa)
MazG nucleotide pyrophosphohydrolase domain protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UM64_9FIRM
MazG nucleotide pyrophosphohydrolase domain protein {ECO:0000313|EMBL:CCZ79140.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_082_000G1_scaffold_454_5
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1914..2102
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KQG5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS48709.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
hypothetical protein
L3_082_000G1_scaffold_454_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2167..2541
DNA (375bp) protein (125aa)
Conserved domain protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6Q6_9FIRM
Conserved domain protein {ECO:0000313|EMBL:CCZ79141.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_082_000G1_scaffold_454_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3118..3987
DNA (870bp) protein (290aa)
ABC-2 type transport system ATP-binding protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VEI6_9FIRM
ABC-2 type transport system ATP-binding protein {ECO:0000313|EMBL:CCZ79142.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ABC transporter ATP-binding protein
L3_082_000G1_scaffold_454_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3965..4666
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULG2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79143.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_082_000G1_scaffold_454_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4654..5025
DNA (372bp) protein (124aa)
GntR family transcriptional regulator n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTW4_9FIRM
GntR family transcriptional regulator {ECO:0000313|EMBL:CCZ79144.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
GntR family transcriptional regulator
L3_082_000G1_scaffold_454_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5027..5692
DNA (666bp) protein (222aa)
ABC-2 type transport system ATP-binding protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UM67_9FIRM
ABC-2 type transport system ATP-binding protein {ECO:0000313|EMBL:CCZ79145.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ABC transporter ATP-binding protein
L3_082_000G1_scaffold_454_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5808..6323
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6R2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79146.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_082_000G1_scaffold_454_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6359..7216)
DNA (858bp) protein (286aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
5,10-methylenetetrahydrofolate reductase, prokaryotic form (EC:1.5.1.20)
Methylenetetrahydrofolate reductase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VEJ2_9FIRM
L3_082_000G1_scaffold_454_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7575..8153)
DNA (579bp) protein (193aa)
Site-specific recombinase XerD n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULX0_9FIRM
Site-specific recombinase XerD {ECO:0000313|EMBL:CCZ79005.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Site-specific recombinase XerD
L3_082_000G1_scaffold_454_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8300..8518
DNA (219bp) protein (73aa)
Global regulator protein family n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULG7_9FIRM
Global regulator protein family {ECO:0000313|EMBL:CCZ79148.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Global regulator protein family.
L3_082_000G1_scaffold_454_15
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

Not on your lists

9702..11147
DNA (1446bp) protein (482aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:95 RepID=R7N940_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF08632.1}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L3_082_000G1_scaffold_454_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11238..12260
DNA (1023bp) protein (341aa)
Bacterial Ig-like domain (Group 2) n=1 Tax=Roseburia sp. CAG:18 RepID=R5V7Y9_9FIRM
Bacterial Ig-like domain (Group 2) {ECO:0000313|EMBL:CCZ79521.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Bacterial Ig-like domain (group 2).
L3_082_000G1_scaffold_454_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12496..13713
DNA (1218bp) protein (406aa)
Acetyltransferase GNAT family n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN97_9FIRM
Acetyltransferase GNAT family {ECO:0000313|EMBL:CCZ79520.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_082_000G1_scaffold_454_18
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13858..15948
DNA (2091bp) protein (697aa)
Putative cache domain protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VIZ6_9FIRM
Putative cache domain protein {ECO:0000313|EMBL:CDC92226.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Methyl-accepting chemotaxis protein
L3_082_000G1_scaffold_454_19
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16051..16896
DNA (846bp) protein (282aa)
Probable lipase/esterase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YWJ4_9FIRM
Probable lipase/esterase {ECO:0000313|EMBL:CDA25891.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
putative lipase/esterase
L3_082_000G1_scaffold_454_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16944..17594
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79518.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_082_000G1_scaffold_454_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18046..18165
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFP8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79517.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_082_000G1_scaffold_454_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18645..20609
DNA (1965bp) protein (655aa)
ATP-dependent DNA helicase, RecQ family (EC:3.6.1.-)
Putative ATP-dependent DNA helicase RecQ n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN91_9FIRM
Putative ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:CCZ79515.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_082_000G1_scaffold_454_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20665..21537
DNA (873bp) protein (291aa)
EDD domain protein DegV family n=1 Tax=Roseburia sp. CAG:18 RepID=R5UV00_9FIRM
EDD domain protein DegV family {ECO:0000313|EMBL:CCZ79514.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
EDD domain protein, DegV family
L3_082_000G1_scaffold_454_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21680..22444)
DNA (765bp) protein (255aa)
Putative diguanylate cyclase/response regulator n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMN1_9FIRM
Putative diguanylate cyclase/response regulator {ECO:0000313|EMBL:CCZ79513.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
response regulator domain-containing protein
L3_082_000G1_scaffold_454_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22458..22847)
DNA (390bp) protein (130aa)
Putative sensory box histidine kinase/response regulator n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFP3_9FIRM
Putative sensory box histidine kinase/response regulator {ECO:0000313|EMBL:CCZ79512.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Signal transduction histidine kinase
L3_082_000G1_scaffold_454_26
unknown

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22877..23104
DNA (228bp) protein (76aa)

This feature has no annotations

L3_082_000G1_scaffold_454_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23211..23633
DNA (423bp) protein (141aa)
Heat shock protein Hsp20 n=1 Tax=Roseburia sp. CAG:18 RepID=R5V7X9_9FIRM
Heat shock protein Hsp20 {ECO:0000313|EMBL:CCZ79511.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
heat shock protein Hsp20
L3_082_000G1_scaffold_454_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23816..25213
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN85_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79510.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_082_000G1_scaffold_454_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25226..26251)
DNA (1026bp) protein (342aa)
Repressor protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UUZ6_9FIRM
Repressor protein {ECO:0000313|EMBL:CCZ79509.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_082_000G1_scaffold_454_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26471..27409
DNA (939bp) protein (313aa)
ABC transporter permease protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMM7_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CCZ79508.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
Displaying items 1-30 of 71 in total

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