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L3_082_000G1_scaffold_705

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_000G1_scaffold_705_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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1..840
DNA (840bp) protein (280aa)
Lacto-N-biose phosphorylase 2 n=9 Tax=Bifidobacterium bifidum RepID=E3ELR6_BIFBS
Lacto-N-biose phosphorylase {ECO:0000313|EMBL:BAQ97446.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
lnbP1; lacto-N-biose phosphorylase 2
L3_082_000G1_scaffold_705_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1065..1454
DNA (390bp) protein (130aa)
Psp Translation initiation inhibitor n=8 Tax=Bifidobacterium RepID=E4NYY9_BIFBP
endoribonuclease L-PSP
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:ADO52462.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_082_000G1_scaffold_705_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1926..3113
DNA (1188bp) protein (396aa)
gde; glycerophosphodiester phosphodiesterase (EC:3.1.4.44)
Glycerophosphodiester phosphodiesterase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M463_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ97448.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_082_000G1_scaffold_705_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


3138..4979
DNA (1842bp) protein (614aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Arginine--tRNA ligase n=2 Tax=Bifidobacterium bifidum RepID=E4V7L5_BIFBI
argS; arginyl-tRNA synthetase
L3_082_000G1_scaffold_705_5
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5145..6773
DNA (1629bp) protein (543aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
diaminopimelate decarboxylase n=1 Tax=Bifidobacterium bifidum RepID=UPI0002D8996B
L3_082_000G1_scaffold_705_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6890..7396)
DNA (507bp) protein (169aa)
exp5; PTS system glucose-specific transporter subunit IICBA (EC:2.7.1.69)
PTS system, glucose-specific IIA component n=4 Tax=Bifidobacterium RepID=E3ELS1_BIFBS
PTS system, glucose-specific IIA component {ECO:0000313|EMBL:ADO52466.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_082_000G1_scaffold_705_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7393..8943)
DNA (1551bp) protein (517aa)
PTS system N-acetylglucosamine-specific transporter subunit IIBC (EC:2.7.1.69)
PTS system, N-acetylglucosamine-specific IIC subunit n=7 Tax=Bifidobacterium RepID=E3ELS2_BIFBS
PTS system protein {ECO:0000313|EMBL:CDB23064.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_082_000G1_scaffold_705_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9419..10732
DNA (1314bp) protein (438aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Homoserine dehydrogenase n=3 Tax=Bifidobacterium RepID=E3ELS3_BIFBS
thrA; Homoserine dehydrogenase
L3_082_000G1_scaffold_705_9
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10879..11877
DNA (999bp) protein (333aa)
thrB; homoserine kinase (EC:2.7.1.39)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Homoserine kinase n=4 Tax=Bifidobacterium RepID=E4NYZ6_BIFBP
L3_082_000G1_scaffold_705_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11990..13426
DNA (1437bp) protein (479aa)
Maf-like protein BBIF_0265 n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6HA47_9BIFI
Maf-like protein BBIF_0265 {ECO:0000313|EMBL:CDB23067.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Maf-like protein
L3_082_000G1_scaffold_705_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13430..13810)
DNA (381bp) protein (127aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V7M1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82617.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_082_000G1_scaffold_705_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13810..14172)
DNA (363bp) protein (121aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELS7_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52472.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_082_000G1_scaffold_705_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14524..15423
DNA (900bp) protein (300aa)
ABC-type antimicrobial peptide transport system protein n=2 Tax=Bifidobacterium RepID=R6GFB9_9BIFI
ABC transporter ATP-binding component {ECO:0000313|EMBL:BAQ97459.1}; ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI82615.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
ABC transporter
L3_082_000G1_scaffold_705_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15420..16874
DNA (1455bp) protein (485aa)
Transporter n=8 Tax=Bifidobacterium RepID=E4NZ01_BIFBP
transporter
Transporter {ECO:0000313|EMBL:CDB23071.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_082_000G1_scaffold_705_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16949..17893)
DNA (945bp) protein (315aa)
Transporter n=6 Tax=Bifidobacterium RepID=E4NZ02_BIFBP
transporter
Transporter {ECO:0000313|EMBL:EKE51508.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_082_000G1_scaffold_705_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18116..19366
DNA (1251bp) protein (417aa)
dapE; succinyl-diaminopimelate desuccinylase DapE (EC:3.5.1.18)
DapE Succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:KFI42355.1}; EC=3.5.1.18 {ECO:0000313|EMBL:KFI42355.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
DapE Succinyl-diaminopimelate desuccinylase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZ03_BIFBP
L3_082_000G1_scaffold_705_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19810..22713
DNA (2904bp) protein (968aa)
rne; ribonuclease G (EC:3.1.26.12)
ribonuclease G n=1 Tax=Bifidobacterium bifidum RepID=UPI00037FB66F
S1 RNA binding domain protein {ECO:0000313|EMBL:ERI82610.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_082_000G1_scaffold_705_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


22880..23188
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=8 Tax=Bifidobacterium RepID=E3ELT3_BIFBS
rplU; 50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_082_000G1_scaffold_705_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


23213..23464
DNA (252bp) protein (84aa)
50S ribosomal protein L27 n=8 Tax=Bifidobacterium RepID=E3ELT4_BIFBS
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_082_000G1_scaffold_705_20
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23931..25034)
DNA (1104bp) protein (368aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZ07_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB23079.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_082_000G1_scaffold_705_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25454..27139
DNA (1686bp) protein (562aa)
GTPase Obg n=3 Tax=Bifidobacterium bifidum RepID=E3ELT6_BIFBS
GTPase ObgE
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_082_000G1_scaffold_705_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27412..28542
DNA (1131bp) protein (377aa)
proB; glutamate 5-kinase ProB (EC:2.7.2.11)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00057535}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Glutamate 5-kinase n=5 Tax=Bifidobacterium RepID=E3ENJ0_BIFBS
L3_082_000G1_scaffold_705_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28630..29835
DNA (1206bp) protein (402aa)
Aspartate aminotransferase {ECO:0000313|EMBL:EKF15951.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EKF15951.1};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Aminotransferase n=3 Tax=Bifidobacterium RepID=E3ENJ1_BIFBS
aspC1; aminotransferase
L3_082_000G1_scaffold_705_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30124..30351
DNA (228bp) protein (76aa)
Protein translocase subunit SecE n=6 Tax=Bifidobacterium RepID=E3ENJ2_BIFBS
secE; preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_082_000G1_scaffold_705_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30381..31223
DNA (843bp) protein (281aa)
Transcription termination/antitermination protein NusG n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I9B6_BIFBI
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
nusG; transcription antitermination factor NusG
L3_082_000G1_scaffold_705_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31329..32213
DNA (885bp) protein (295aa)
Phospholipid/glycerol acyltransferase n=6 Tax=Bifidobacterium RepID=E3ENJ4_BIFBS
phospholipid/glycerol acyltransferase
PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:KFI42365.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_082_000G1_scaffold_705_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32334..33329
DNA (996bp) protein (332aa)
gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=4 Tax=Bifidobacterium bifidum RepID=E3ENJ5_BIFBS
L3_082_000G1_scaffold_705_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33566..34711
DNA (1146bp) protein (382aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
D-alanine--D-alanine ligase n=2 Tax=Bifidobacterium bifidum RepID=E3ENJ6_BIFBS
ddlA; D-alanine--D-alanine ligase
L3_082_000G1_scaffold_705_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34741..35772
DNA (1032bp) protein (344aa)
Glycerophosphoryl diester phosphodiesterase n=3 Tax=Bifidobacterium bifidum RepID=E3ENJ7_BIFBS
glpQ; glycerophosphoryl diester phosphodiesterase GlpQ
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:ADO52489.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_082_000G1_scaffold_705_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36278..42073
DNA (5796bp) protein (1932aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENJ8_BIFBS
multiple sugar recognition domains
Uncharacterized protein {ECO:0000313|EMBL:ADO52490.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Displaying items 1-30 of 68 in total

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