ggKbase home page

L3_082_000G1_scaffold_117

Search features with annotation key words

Displaying items 1-30 of 103 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_000G1_scaffold_117_1
Adlercreutzia equolifaciens, Adlercreutzia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1..459)
DNA (459bp) protein (153aa)
Oxidoreductase n=1 Tax=Adlercreutzia equolifaciens DSM 19450 RepID=S6CE73_9ACTN
oxidoreductase
Oxidoreductase {ECO:0000313|EMBL:BAN77899.1}; TaxID=1384484 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Adlercreutzia.;" source="Adlercreutzia equolifaciens DSM 19450.;"
L3_082_000G1_scaffold_117_2
Enterorhabdus caecimuris, Enterorhabdus, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(477..2096)
DNA (1620bp) protein (540aa)
Uncharacterized protein n=1 Tax=Enterorhabdus caecimuris B7 RepID=R9KXV7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EOS51061.1}; TaxID=1235794 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Enterorhabdus.;" source="Enterorhabdus caecimuris B7.;"
oxidoreductase
L3_082_000G1_scaffold_117_3
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

2186..3469
DNA (1284bp) protein (428aa)
Kinase, PfkB family {ECO:0000313|EMBL:EEE17199.1}; EC=2.7.1.4 {ECO:0000313|EMBL:EEE17199.1};; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
Kinase, PfkB family n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CM49_9ACTN
PfkB domain-containing protein
L3_082_000G1_scaffold_117_4
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3491..4090)
DNA (600bp) protein (200aa)
Indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8)
Indolepyruvate ferredoxin oxidoreductase, beta subunit n=1 Tax=Clostridium sp. D5 RepID=F0Z3Q5_9CLOT
Indolepyruvate ferredoxin oxidoreductase, beta subunit {ECO:0000313|EMBL:EGB91319.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L3_082_000G1_scaffold_117_5
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4083..6137)
DNA (2055bp) protein (685aa)
Indolepyruvate ferredoxin oxidoreductase alpha and beta subunits n=1 Tax=Eggerthella sp. CAG:209 RepID=R6H7S3_9ACTN
Indolepyruvate oxidoreductase subunit IorA {ECO:0000313|EMBL:EXJ16179.1}; TaxID=1249627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
indolepyruvate oxidoreductase
L3_082_000G1_scaffold_117_6
Slackia piriformis, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6646..7497)
DNA (852bp) protein (284aa)
putative tyrosine/serine phosphatase (EC:3.1.3.48)
Uncharacterized protein n=1 Tax=Slackia piriformis YIT 12062 RepID=K0YIF8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EJZ83241.1}; TaxID=742818 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia piriformis YIT 12062.;"
L3_082_000G1_scaffold_117_7
Rhodococcus erythropolis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7626..8120)
DNA (495bp) protein (165aa)
Putative AraC family transcriptional regulator n=1 Tax=Rhodococcus erythropolis (strain PR4 / NBRC 100887) RepID=C0ZM46_RHOE4
putative AraC family transcriptional regulator
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:BAH31023.1}; TaxID=234621 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus erythropolis (strain PR4 / NBRC 100887).;"
L3_082_000G1_scaffold_117_8
Slackia sp. CM382, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

8133..9158
DNA (1026bp) protein (342aa)
Transcriptional regulator, MerR family n=2 Tax=Slackia RepID=D0WHM9_9ACTN
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EJU34987.1}; TaxID=1111137 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia sp. CM382.;"
MerR family transcriptional regulator
L3_082_000G1_scaffold_117_9
Adlercreutzia equolifaciens, Adlercreutzia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9155..10051)
DNA (897bp) protein (299aa)
Oxidoreductase n=1 Tax=Adlercreutzia equolifaciens DSM 19450 RepID=S6CE73_9ACTN
oxidoreductase
Oxidoreductase {ECO:0000313|EMBL:BAN77899.1}; TaxID=1384484 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Adlercreutzia.;" source="Adlercreutzia equolifaciens DSM 19450.;"
L3_082_000G1_scaffold_117_10
Slackia sp. CM382, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10057..11952)
DNA (1896bp) protein (632aa)
Oxidoreductase molybdopterin binding domain protein n=2 Tax=Slackia RepID=D0WHM6_9ACTN
Oxidoreductase molybdopterin-binding domain protein {ECO:0000313|EMBL:EJU34964.1}; TaxID=1111137 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia sp. CM382.;"
molybdopterin binding oxidoreductase
L3_082_000G1_scaffold_117_11
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12145..12612)
DNA (468bp) protein (156aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FB77_9ACTN
L3_082_000G1_scaffold_117_12
Enterorhabdus caecimuris, Enterorhabdus, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12779..13639)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Enterorhabdus caecimuris B7 RepID=R9KYL3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EOS51495.1}; TaxID=1235794 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Enterorhabdus.;" source="Enterorhabdus caecimuris B7.;"
hypothetical protein
L3_082_000G1_scaffold_117_13
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(13763..14491)
DNA (729bp) protein (243aa)
Transcriptional regulator, AraC family n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SNU6_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFP60870.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
hypothetical protein
L3_082_000G1_scaffold_117_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14498..14776)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Clostridium difficile F501 RepID=T4B522_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQI02928.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
truncated oxidoreductase
L3_082_000G1_scaffold_117_15
Adlercreutzia equolifaciens, Adlercreutzia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15082..15735)
DNA (654bp) protein (218aa)
Oxidoreductase n=1 Tax=Adlercreutzia equolifaciens DSM 19450 RepID=S6CE73_9ACTN
oxidoreductase
Oxidoreductase {ECO:0000313|EMBL:BAN77899.1}; TaxID=1384484 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Adlercreutzia.;" source="Adlercreutzia equolifaciens DSM 19450.;"
L3_082_000G1_scaffold_117_16
Eggerthella sp. HGA1, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15932..17305)
DNA (1374bp) protein (458aa)
Radical SAM superfamily protein n=2 Tax=Eggerthella RepID=E5X8U9_9ACTN
Radical SAM domain protein {ECO:0000313|EMBL:EGC88593.1}; TaxID=910311 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella.;" source="Eggerthella sp. HGA1.;"
coproporphyrinogen dehydrogenase
L3_082_000G1_scaffold_117_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17429..18295
DNA (867bp) protein (289aa)
pdxK; pyridoxine kinase (EC:2.7.1.35)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Pyridoxine kinase n=7 Tax=Bifidobacterium bifidum RepID=E3EMD5_BIFBS
L3_082_000G1_scaffold_117_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18469..19584
DNA (1116bp) protein (372aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GPI3_BIFLS
endonuclease/exonuclease/phosphatase
Endonuclease/Exonuclease/phosphatase family protein {ECO:0000313|EMBL:CEF05673.1}; TaxID=1682 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis.;"
L3_082_000G1_scaffold_117_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19603..19884)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Clostridium difficile F501 RepID=T4B522_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQI02928.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
protein tyrosine/serine phosphatase
L3_082_000G1_scaffold_117_20
Eggerthella lenta, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(19897..20799)
DNA (903bp) protein (301aa)
Oxidoreductase molybdopterin binding domain-containing protein n=2 Tax=Eggerthella RepID=E5X9I6_9ACTN
molybdopterin binding oxidoreductase
Oxidoreductase molybdopterin binding {ECO:0000313|EMBL:ACV54290.1}; Flags: Precursor;; TaxID=479437 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella.;" source="Eggerthella lenta (strain ATCC 25559 / DSM 2243 / JCM 9979 / NCTC; 11813 / VPI 0255) (Eubacterium lentum).;"
L3_082_000G1_scaffold_117_21
Slackia heliotrinireducens, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20792..22429)
DNA (1638bp) protein (546aa)
Sulfite oxidase-like oxidoreductase n=1 Tax=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) RepID=C7N197_SLAHD
sulfite oxidase-like oxidoreductase
Sulfite oxidase-like oxidoreductase {ECO:0000313|EMBL:ACV23319.1}; TaxID=471855 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029; / RHS 1) (Peptococcus heliotrinreducens).;"
L3_082_000G1_scaffold_117_22
Slackia heliotrinireducens, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

22690..24366
DNA (1677bp) protein (559aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) RepID=C7N196_SLAHD
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:ACV23318.1}; TaxID=471855 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029; / RHS 1) (Peptococcus heliotrinreducens).;"
L3_082_000G1_scaffold_117_23
Mobiluncus mulieris, Mobiluncus, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24579..25829)
DNA (1251bp) protein (417aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R0N7_BIFLM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEZ90921.1}; TaxID=596328 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Mobiluncus.;" source="Mobiluncus mulieris 28-1.;"
L3_082_000G1_scaffold_117_24
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(26164..26865)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Atopobium minutum 10063974 RepID=N2BVX1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EMZ42730.1}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minutum 10063974.;"
L3_082_000G1_scaffold_117_25
Coriobacterium glomerans, Coriobacterium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(27442..29295)
DNA (1854bp) protein (618aa)
ABC transporter related protein n=1 Tax=Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2) RepID=F2N9C0_CORGP
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:AEB07868.1}; TaxID=700015 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Coriobacterium.;" source="Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 /; PW2).;"
L3_082_000G1_scaffold_117_26
Olsenella uli, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(29386..29985)
DNA (600bp) protein (200aa)
NUDIX hydrolase n=1 Tax=Olsenella uli (strain ATCC 49627 / DSM 7084 / CIP 109912 / JCM 12494 / VPI D76D-27C) RepID=E1QXQ1_OLSUV
NUDIX hydrolase
NUDIX domain protein {ECO:0000313|EMBL:EUB30764.1}; TaxID=1190621 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella uli MSTE5.;"
L3_082_000G1_scaffold_117_27
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(29991..31304)
DNA (1314bp) protein (438aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
phosphoribosylamine--glycine ligase n=1 Tax=Coriobacteriaceae RepID=UPI00034B6B06
phosphoribosylamine/glycine ligase
L3_082_000G1_scaffold_117_28
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(31423..32706)
DNA (1284bp) protein (428aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Atopobium sp. oral taxon 199 str. F0494 RepID=S2ZWV1_9ACTN
L3_082_000G1_scaffold_117_29
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(32855..34246)
DNA (1392bp) protein (464aa)
Replicative DNA helicase n=1 Tax=Collinsella sp. CAG:398 RepID=R6ZMU4_9ACTN
Replicative DNA helicase {ECO:0000313|EMBL:CDD42306.1}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
DNA helicase
L3_082_000G1_scaffold_117_30
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(34399..34944)
DNA (546bp) protein (182aa)
50S ribosomal protein L9 n=1 Tax=Collinsella sp. CAG:289 RepID=R7D5H2_9ACTN
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
50S ribosomal protein L9
Displaying items 1-30 of 103 in total

View Taxonomy