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L3_082_000G1_scaffold_354

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_000G1_scaffold_354_1
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(259..22176)
DNA (21918bp) protein (7306aa)
hypothetical protein n=1 Tax=Coriobacteriaceae RepID=UPI00036C2BC2
Rhs family protein {ECO:0000313|EMBL:CDD43797.1}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
fbp; hypothetical fibronectin binding protein
L3_082_000G1_scaffold_354_2
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(22971..24437)
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:398 RepID=R6Z2Z2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDD42668.1}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
putative transcriptional regulator
L3_082_000G1_scaffold_354_3
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24810..25901
DNA (1092bp) protein (364aa)
Uncharacterized protein n=3 Tax=Clostridium RepID=D4C7H5_9CLOT
Protein of unknown function (DUF3089).
Uncharacterized protein {ECO:0000313|EMBL:CCY86238.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_082_000G1_scaffold_354_4
Eggerthella lenta, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

26501..27553
DNA (1053bp) protein (351aa)
L-asparaginase, type I n=1 Tax=Eggerthella lenta (strain ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255) RepID=C8WMV8_EGGLE
type I L-asparaginase
Uncharacterized protein {ECO:0000313|EMBL:KGI76499.1}; TaxID=742768 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella.;" source="Eggerthella lenta 1_1_60AFAA.;"
L3_082_000G1_scaffold_354_5
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28072..30180
DNA (2109bp) protein (703aa)
Predicted metalloendopeptidase (EC:3.4.24.-)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A8 RepID=N9X8H4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ11505.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L3_082_000G1_scaffold_354_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30276..31979)
DNA (1704bp) protein (568aa)
Bacterial regulatory s, luxR family protein n=1 Tax=Clostridium difficile F501 RepID=T4BP19_CLODI
Bacterial regulatory s, luxR family protein {ECO:0000313|EMBL:EQI11697.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
LuxR family transcriptional regulator
L3_082_000G1_scaffold_354_7
Eggerthella lenta, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

32354..34018
DNA (1665bp) protein (555aa)
Tat (Twin-arginine translocation) pathway signal sequence domain protein n=1 Tax=Clostridium difficile F501 RepID=T4BRT1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:KGI73460.1}; TaxID=742768 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella.;" source="Eggerthella lenta 1_1_60AFAA.;"
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
L3_082_000G1_scaffold_354_8
Caenorhabditis briggsae, Caenorhabditis, Rhabditida, Chromadorea, Nematoda, Metazoa

Not on your lists

34110..34745
DNA (636bp) protein (212aa)
C. briggsae CBR-RSR-1 protein n=1 Tax=Caenorhabditis briggsae RepID=UPI0000121EFF
Protein CBR-RSR-1 {ECO:0000313|EMBL:CAP27875.2}; TaxID=6238 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.;" source="Caenorhabditis briggsae.;"
L3_082_000G1_scaffold_354_9
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

34926..36287
DNA (1362bp) protein (454aa)
NLP/P60 protein n=1 Tax=Collinsella sp. CAG:289 RepID=R7D7Q8_9ACTN
NLP/P60 protein {ECO:0000313|EMBL:CDD86236.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
hypothetical protein
L3_082_000G1_scaffold_354_10
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36723..37739
DNA (1017bp) protein (339aa)
gyaR; GyaR protein (EC:1.1.1.26)
Glycerate dehydrogenase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TKC3_9FIRM
Glycerate dehydrogenase {ECO:0000313|EMBL:CDC68291.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_082_000G1_scaffold_354_11
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

37991..38827
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6QBL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC28166.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
cyclase family protein
L3_082_000G1_scaffold_354_12
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

39006..39497
DNA (492bp) protein (164aa)
Flavodoxin n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HJC4_9FIRM
Flavodoxin {ECO:0000313|EMBL:CCY28199.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
flavodoxin/nitric oxide synthase
L3_082_000G1_scaffold_354_13
Slackia piriformis, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(39506..41251)
DNA (1746bp) protein (582aa)
Uncharacterized protein n=1 Tax=Slackia piriformis YIT 12062 RepID=K0YWD3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EJZ83799.1}; TaxID=742818 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia piriformis YIT 12062.;"
LuxR family transcriptional regulator
L3_082_000G1_scaffold_354_14
Paenibacillus sp. FSL R5-192, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

41488..42525
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Paenibacillus massiliensis RepID=UPI00037F38AF
2-keto-3-deoxygluconate permease {ECO:0000313|EMBL:ETT29603.1}; TaxID=1226754 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R5-192.;"
kdgT2; 2-keto-3-deoxygluconate permease KdgT
L3_082_000G1_scaffold_354_15
Eggerthella sp. YY7918, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

42757..44688
DNA (1932bp) protein (644aa)
Putative uncharacterized protein n=1 Tax=Eggerthella sp. (strain YY7918) RepID=F7UW24_EEGSY
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK45397.1}; TaxID=502558 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella.;" source="Eggerthella sp. (strain YY7918).;"
L3_082_000G1_scaffold_354_16
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(45086..46030)
DNA (945bp) protein (315aa)
Predicted permease n=1 Tax=Collinsella sp. CAG:289 RepID=R7D3T2_9ACTN
Predicted permease {ECO:0000313|EMBL:CDD85269.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
hypothetical protein
L3_082_000G1_scaffold_354_17
Bifidobacterium mongoliense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(46646..47422)
DNA (777bp) protein (259aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WH22_9ACTN
Dioxygenase-like 2-nitropropane dioxygenase {ECO:0000313|EMBL:KFI75526.1}; TaxID=1437603 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium mongoliense DSM 21395.;"
hypothetical protein
L3_082_000G1_scaffold_354_18
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(48049..50232)
DNA (2184bp) protein (728aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WHQ0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX71475.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
hypothetical protein
L3_082_000G1_scaffold_354_19
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(50222..51016)
DNA (795bp) protein (265aa)
ABC transporter ATP-binding protein n=1 Tax=Collinsella sp. CAG:398 RepID=R6Z5U7_9ACTN
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDD38934.1}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
ABC transporter
L3_082_000G1_scaffold_354_20
Bifidobacterium biavatii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

51188..51787
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GTB7_BIFLS
Uncharacterized protein {ECO:0000313|EMBL:KFI50783.1}; TaxID=1437608 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium biavatii DSM 23969.;"
hypothetical protein
L3_082_000G1_scaffold_354_21
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(51911..52993)
DNA (1083bp) protein (361aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:398 RepID=R6YZB9_9ACTN
integral membrane sensor signal transduction histidine kinase
L3_082_000G1_scaffold_354_22
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(52990..53673)
DNA (684bp) protein (228aa)
Response regulator receiver domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GAQ0_9ACTN
Response regulator receiver domain protein {ECO:0000313|EMBL:EEA90576.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
two component transcriptional regulator, winged helix family
L3_082_000G1_scaffold_354_23
Desulfitobacterium dehalogenans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(53780..54109)
DNA (330bp) protein (110aa)
FMN-binding domain-containing protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C36FE1
FMN-binding domain-containing protein
Flavocytochrome c {ECO:0000313|EMBL:AFM01946.1}; Flags: Precursor;; TaxID=756499 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 /; JW/IU-DC1).;"
L3_082_000G1_scaffold_354_24
Atopobium sp. oral taxon 810, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(54706..55368)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Atopobium sp. oral taxon 810 str. F0209 RepID=U1WSN3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:ERI05675.1}; TaxID=1321773 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. oral taxon 810 str. F0209.;"
hypothetical protein
L3_082_000G1_scaffold_354_25
Pantoea sp. aB, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55460..56197)
DNA (738bp) protein (246aa)
TolA protein n=1 Tax=Pantoea agglomerans 299R RepID=L7BTA7_ENTAG
Protein TolA {ECO:0000313|EMBL:EFM21376.1}; TaxID=517433 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. aB.;"
tolA; TolA protein
L3_082_000G1_scaffold_354_26
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(56969..58600)
DNA (1632bp) protein (544aa)
IMP cyclohydrolase; phosphoribosylaminoimidazolecarboxamide formyltransferase (EC:3.5.4.10 2.1.2.3)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WIP3_9ACTN
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
L3_082_000G1_scaffold_354_27
Slackia piriformis, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(58704..61769)
DNA (3066bp) protein (1022aa)
Uncharacterized protein n=1 Tax=Slackia piriformis YIT 12062 RepID=K0ZA09_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EJZ84240.1}; TaxID=742818 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia piriformis YIT 12062.;"
hypothetical protein
L3_082_000G1_scaffold_354_28
unknown

Not on your lists

comp(61769..62803)
DNA (1035bp) protein (345aa)

This feature has no annotations

L3_082_000G1_scaffold_354_29
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(62976..64001)
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9T2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KFI95627.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
Hypothetical protein
L3_082_000G1_scaffold_354_30
Cryptobacterium curtum, Cryptobacterium, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(64186..65253)
DNA (1068bp) protein (356aa)
Spermidine synthase n=1 Tax=Cryptobacterium curtum (strain ATCC 700683 / DSM 15641 / 12-3) RepID=C7MMJ9_CRYCD
spermidine synthase
Spermidine synthase {ECO:0000313|EMBL:ACU94139.1}; TaxID=469378 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Cryptobacterium.;" source="Cryptobacterium curtum (strain ATCC 700683 / DSM 15641 / 12-3).;"
Displaying items 1-30 of 36 in total

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