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L3_082_000G1_scaffold_1154

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_000G1_scaffold_1154_1
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..219)
DNA (219bp) protein (73aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
Beta galactosidase small chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6Z5_9FIRM
glycoside hydrolase family protein
L3_082_000G1_scaffold_1154_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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420..1283
DNA (864bp) protein (288aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KMT8_9FIRM
AraC-type DNA-binding domain-containing proteins
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CBL08190.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_082_000G1_scaffold_1154_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1356..2252)
DNA (897bp) protein (299aa)
DNA-binding helix-turn-helix protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6Z7_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEV02362.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Helix-turn-helix.
L3_082_000G1_scaffold_1154_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2411..2524)
DNA (114bp) protein (38aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6Z8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02363.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_082_000G1_scaffold_1154_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2644..4164)
DNA (1521bp) protein (507aa)
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases (EC:1.3.99.22)
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases {ECO:0000313|EMBL:CBL12699.1}; EC=1.3.99.22 {ECO:0000313|EMBL:CBL12699.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZA9_9FIRM
L3_082_000G1_scaffold_1154_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4180..4809)
DNA (630bp) protein (210aa)
Zn-dependent hydrolases, including glyoxylases n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KMN3_9FIRM
Zn-dependent hydrolases, including glyoxylases
Zn-dependent hydrolases, including glyoxylases {ECO:0000313|EMBL:CBL08135.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_082_000G1_scaffold_1154_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4914..7235)
DNA (2322bp) protein (774aa)
(P)ppGpp synthetase, RelA/SpoT family {ECO:0000313|EMBL:CBL12697.1}; EC=2.7.6.5 {ECO:0000313|EMBL:CBL12697.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
(p)ppGpp synthetase, RelA/SpoT family (EC:2.7.6.5)
(P)ppGpp synthetase, RelA/SpoT family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZA7_9FIRM
L3_082_000G1_scaffold_1154_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7308..8270)
DNA (963bp) protein (321aa)
Acetyltransferases, including N-acetylases of ribosomal proteins n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KMN1_9FIRM
Acetyltransferases, including N-acetylases of ribosomal proteins
Acetyltransferases, including N-acetylases of ribosomal proteins {ECO:0000313|EMBL:CBL08133.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_082_000G1_scaffold_1154_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8295..10538)
DNA (2244bp) protein (748aa)
Fibronectin type III domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KMN0_9FIRM
Fibronectin type III domain {ECO:0000313|EMBL:CBL08132.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Fibronectin type III domain.
L3_082_000G1_scaffold_1154_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10559..11467)
DNA (909bp) protein (303aa)
dihydroorotate dehydrogenase (subfamily 1) family protein (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Dihydroorotate dehydrogenase n=4 Tax=Roseburia RepID=D4KMM9_9FIRM
L3_082_000G1_scaffold_1154_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11467..12243)
DNA (777bp) protein (259aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=2 Tax=Roseburia intestinalis RepID=D4KMM8_9FIRM
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_082_000G1_scaffold_1154_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12273..13598)
DNA (1326bp) protein (442aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=2 Tax=Roseburia RepID=C7G707_9FIRM
L3_082_000G1_scaffold_1154_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13712..14956)
DNA (1245bp) protein (415aa)
GTPase HflX n=2 Tax=Roseburia RepID=D4KMM6_9FIRM
GTP-binding protein HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_082_000G1_scaffold_1154_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14983..16161)
DNA (1179bp) protein (393aa)
Tetratricopeptide repeat protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G709_9FIRM
Putative tetratricopeptide repeat-containing domain protein {ECO:0000313|EMBL:CDA54212.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_082_000G1_scaffold_1154_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16182..16673)
DNA (492bp) protein (164aa)
Acetyltransferase GNAT family n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AT69_9FIRM
Acetyltransferase GNAT family {ECO:0000313|EMBL:CDA54210.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted acetyltransferase
L3_082_000G1_scaffold_1154_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17092..17601
DNA (510bp) protein (170aa)
RNA polymerase sigma factor SigV n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AZH5_9FIRM
RNA polymerase sigma factor SigV {ECO:0000313|EMBL:CDA54209.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
RNA polymerase sigma factor, sigma-70 family
L3_082_000G1_scaffold_1154_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17598..18506
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G713_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02378.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Protein of unknown function (DUF3298).
L3_082_000G1_scaffold_1154_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18536..19888
DNA (1353bp) protein (451aa)
Predicted membrane protein involved in D-alanine export n=2 Tax=Roseburia intestinalis RepID=D4KMM2_9FIRM
Predicted membrane protein involved in D-alanine export
Predicted membrane protein involved in D-alanine export {ECO:0000313|EMBL:CBL08124.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_082_000G1_scaffold_1154_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19901..20740
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G715_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02380.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_082_000G1_scaffold_1154_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20855..22111
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G716_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEV02381.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_082_000G1_scaffold_1154_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22249..22791)
DNA (543bp) protein (181aa)
CarD-like protein n=4 Tax=Roseburia RepID=C7G717_9FIRM
CarD-like protein {ECO:0000313|EMBL:EEV02382.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Transcriptional regulators, similar to M. xanthus CarD
L3_082_000G1_scaffold_1154_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23043..26828)
DNA (3786bp) protein (1262aa)
Bacterial group 2 Ig-like protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G718_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:EEV02383.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Bacterial surface proteins containing Ig-like domains
L3_082_000G1_scaffold_1154_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26964..27776)
DNA (813bp) protein (271aa)
Integrase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BLE4_9FIRM
Integrase {ECO:0000313|EMBL:CDA54197.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Site-specific recombinase XerD
L3_082_000G1_scaffold_1154_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27999..29024)
DNA (1026bp) protein (342aa)
Sugar kinases, ribokinase family (EC:2.7.1.45)
Sugar kinases, ribokinase family n=4 Tax=Roseburia RepID=D4KML5_9FIRM
Kinase, PfkB family {ECO:0000313|EMBL:EEV02386.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_082_000G1_scaffold_1154_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29373..30392
DNA (1020bp) protein (340aa)
Sugar kinases, ribokinase family (EC:2.7.1.45)
Sugar kinases, ribokinase family {ECO:0000313|EMBL:CBL08116.1}; EC=2.7.1.45 {ECO:0000313|EMBL:CBL08116.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Sugar kinases, ribokinase family n=2 Tax=Roseburia intestinalis RepID=D4KML4_9FIRM
L3_082_000G1_scaffold_1154_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30537..31562)
DNA (1026bp) protein (342aa)
Zn-dependent dipeptidase, microsomal dipeptidase homolog (EC:3.4.13.19)
Renal dipeptidase family protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G723_9FIRM
Renal dipeptidase family protein {ECO:0000313|EMBL:EEV02388.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_082_000G1_scaffold_1154_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31590..32912)
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G724_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02389.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_082_000G1_scaffold_1154_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32860..33057)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G725_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02390.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_082_000G1_scaffold_1154_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33002..33343)
DNA (342bp) protein (114aa)
Transcriptional regulator, PadR family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G726_9FIRM
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EEV02391.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
transcriptional regulator, PadR family
Displaying 29 items

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