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L3_082_000G1_scaffold_1756

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_000G1_scaffold_1756_1
unknown

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3..164
DNA (162bp) protein (54aa)

This feature has no annotations

L3_082_000G1_scaffold_1756_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(188..1039)
DNA (852bp) protein (284aa)
Putative DNA metabolism protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAN6_9FIRM
Putative DNA metabolism protein {ECO:0000313|EMBL:EEV01054.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_082_000G1_scaffold_1756_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1168..2448)
DNA (1281bp) protein (427aa)
Predicted DNA-binding protein with the Helix-hairpin-helix motif n=2 Tax=Roseburia intestinalis RepID=D4KU83_9FIRM
Predicted DNA-binding protein with the Helix-hairpin-helix motif
Predicted DNA-binding protein with the Helix-hairpin-helix motif {ECO:0000313|EMBL:CBL10791.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_082_000G1_scaffold_1756_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2748..4841
DNA (2094bp) protein (698aa)
Cache domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAN4_9FIRM
Cache domain protein {ECO:0000313|EMBL:EEV01052.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Methyl-accepting chemotaxis protein
L3_082_000G1_scaffold_1756_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5048..5467
DNA (420bp) protein (140aa)
Uncharacterized protein n=3 Tax=Roseburia intestinalis RepID=C7GAN3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10793.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_082_000G1_scaffold_1756_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5478..6350
DNA (873bp) protein (291aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=2 Tax=Roseburia RepID=C7GAN2_9FIRM
L3_082_000G1_scaffold_1756_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6372..6998
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAN1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV01049.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_082_000G1_scaffold_1756_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7057..8079
DNA (1023bp) protein (341aa)
SpoIID/LytB domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKB5_9FIRM
SpoIID/LytB domain
SpoIID/LytB domain {ECO:0000313|EMBL:CBL10795.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_082_000G1_scaffold_1756_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8164..8937
DNA (774bp) protein (258aa)
Membrane proteins related to metalloendopeptidases n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKB6_9FIRM
Membrane proteins related to metalloendopeptidases
Membrane proteins related to metalloendopeptidases {ECO:0000313|EMBL:CBL10796.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_082_000G1_scaffold_1756_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9056..10669
DNA (1614bp) protein (538aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU90_9FIRM
diguanylate cyclase (GGDEF) domain
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CBL10930.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_082_000G1_scaffold_1756_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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11041..12633
DNA (1593bp) protein (531aa)
Superfamily II DNA and RNA helicases n=2 Tax=Roseburia intestinalis RepID=D4KKB8_9FIRM
DEAD/DEAH box helicase {ECO:0000313|EMBL:EEV01044.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Superfamily II DNA and RNA helicases
L3_082_000G1_scaffold_1756_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12703..14052)
DNA (1350bp) protein (450aa)
Putative efflux protein, MATE family n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKB9_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL10799.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_082_000G1_scaffold_1756_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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14298..14990
DNA (693bp) protein (231aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Roseburia RepID=D4KU93_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulator receiver domain protein {ECO:0000313|EMBL:EEV01042.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_082_000G1_scaffold_1756_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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14987..17524
DNA (2538bp) protein (846aa)
Histidine kinase A domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAM3_9FIRM
Histidine kinase A domain protein {ECO:0000313|EMBL:EEV01041.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_082_000G1_scaffold_1756_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17933..18355
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU94_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10934.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_082_000G1_scaffold_1756_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18444..18986)
DNA (543bp) protein (181aa)
Rubrerythrin n=4 Tax=Roseburia RepID=D4KKC1_9FIRM
Rubrerythrin
Rubrerythrin {ECO:0000313|EMBL:CDA57262.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_082_000G1_scaffold_1756_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19170..19562)
DNA (393bp) protein (131aa)
Fe2+/Zn2+ uptake regulation proteins n=4 Tax=Roseburia RepID=D4KKC2_9FIRM
Fe2+/Zn2+ uptake regulation proteins
Fe2+/Zn2+ uptake regulation proteins {ECO:0000313|EMBL:CBL10936.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_082_000G1_scaffold_1756_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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19738..21354
DNA (1617bp) protein (539aa)
Sensory box/GGDEF family protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B286_9FIRM
Sensory box/GGDEF family protein {ECO:0000313|EMBL:CDA57260.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
two-component system PleD-like family response regulator
L3_082_000G1_scaffold_1756_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21463..22464
DNA (1002bp) protein (334aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKC3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10803.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_082_000G1_scaffold_1756_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22521..23099)
DNA (579bp) protein (193aa)
Acetyltransferases, including N-acetylases of ribosomal proteins (EC:2.3.1.128)
Acetyltransferases, including N-acetylases of ribosomal proteins {ECO:0000313|EMBL:CBL10804.1}; EC=2.3.1.128 {ECO:0000313|EMBL:CBL10804.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Acetyltransferases, including N-acetylases of ribosomal proteins n=3 Tax=Roseburia intestinalis RepID=D4KU98_9FIRM
L3_082_000G1_scaffold_1756_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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23188..23652
DNA (465bp) protein (155aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Cytosine/adenosine deaminases n=3 Tax=Roseburia RepID=D4KU99_9FIRM
Cytosine/adenosine deaminases
L3_082_000G1_scaffold_1756_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23649..23783)
DNA (135bp) protein (45aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV01032.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Displaying 22 items

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