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L3_082_000G1_scaffold_25

Search features with annotation key words

Displaying items 1-30 of 181 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_000G1_scaffold_25_1
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(212..1027)
DNA (816bp) protein (272aa)
Glycosyltransferase, family 8 n=2 Tax=Oscillibacter RepID=U2QED2_9FIRM
Glycosyltransferase, family 8 {ECO:0000313|EMBL:ERK61235.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
LPS:glycosyltransferase
L3_082_000G1_scaffold_25_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1397..5065)
DNA (3669bp) protein (1223aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
DNA-directed RNA polymerase beta subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDV4_9FIRM
L3_082_000G1_scaffold_25_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5089..8928)
DNA (3840bp) protein (1280aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rpoB; DNA-directed RNA polymerase, beta subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDV3_9FIRM
L3_082_000G1_scaffold_25_4
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9929..11002)
DNA (1074bp) protein (358aa)
metallopeptidase, family M24 (EC:3.4.-.-)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TFC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC70945.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_082_000G1_scaffold_25_5
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11009..12265)
DNA (1257bp) protein (419aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
peptidase T (EC:3.4.11.4)
Peptidase T n=2 Tax=Oscillibacter RepID=U2R0P6_9FIRM
L3_082_000G1_scaffold_25_6
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12288..13403)
DNA (1116bp) protein (372aa)
Peptidase M29 aminopeptidase II n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UJJ5_9FIRM
Peptidase M29 aminopeptidase II {ECO:0000313|EMBL:CDC70957.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
peptidase M29 aminopeptidase II
L3_082_000G1_scaffold_25_7
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13485..14897)
DNA (1413bp) protein (471aa)
Transporter, SSS family n=2 Tax=Oscillibacter RepID=U2QH55_9FIRM
Transporter, SSS family {ECO:0000313|EMBL:ERK62022.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
sodium:proline symporter
L3_082_000G1_scaffold_25_8
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15219..17225
DNA (2007bp) protein (669aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Clostridium bolteae CAG:59 RepID=R5F8N3_9CLOT
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:CCX99949.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
methyl-accepting chemotaxis protein
L3_082_000G1_scaffold_25_9
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17333..18703)
DNA (1371bp) protein (457aa)
MATE efflux family protein n=2 Tax=Oscillibacter RepID=U2SP65_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:ERK68108.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
putative efflux protein, MATE family
L3_082_000G1_scaffold_25_10
Bacillus thermoamylovorans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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19043..19381
DNA (339bp) protein (113aa)
PF12986 structural domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H1G6_9CLOT
Strain B4166 NODE_17, whole genome shotgun sequence {ECO:0000313|EMBL:KIO70393.1}; Strain B4167 NODE_345, whole genome shotgun sequence {ECO:0000313|EMBL:KIO70519.1}; Uncharacterized protein {ECO:0000313|EMBL:CEE03030.1}; TaxID=35841 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus thermoamylovorans.;"
hypothetical protein
L3_082_000G1_scaffold_25_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19571..19909
DNA (339bp) protein (113aa)
PF12986 structural domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H1G6_9CLOT
PF12986 structural domain protein {ECO:0000313|EMBL:EJF39280.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L3_082_000G1_scaffold_25_12
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20008..21591
DNA (1584bp) protein (528aa)
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
D-aminoacylase, C-terminal domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H246_9CLOT
D-aminoacylase, C-terminal domain protein {ECO:0000313|EMBL:EJF39303.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_082_000G1_scaffold_25_13
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21642..22973
DNA (1332bp) protein (444aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036D1CC7
TRAP transporter, DctM-like membrane protein {ECO:0000313|EMBL:EJF39312.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
citrate transporter
L3_082_000G1_scaffold_25_14
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23578..26634)
DNA (3057bp) protein (1019aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9KYG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS51584.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
Cation/multidrug efflux pump
L3_082_000G1_scaffold_25_15
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26641..27861)
DNA (1221bp) protein (407aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9JG66_9FIRM
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EOS32986.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
mdtA; multidrug resistance protein MdtA
L3_082_000G1_scaffold_25_16
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

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comp(27933..29216)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S601_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ46269.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
hypothetical protein
L3_082_000G1_scaffold_25_17
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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29623..30306
DNA (684bp) protein (228aa)
Response regulator receiver domain protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LJU4_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EET59022.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
two component transcriptional regulator
L3_082_000G1_scaffold_25_18
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30303..31343
DNA (1041bp) protein (347aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LJU3_9FIRM
histidine kinase
L3_082_000G1_scaffold_25_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31808..33097
DNA (1290bp) protein (430aa)
GMP synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00008728}; EC=6.3.5.2 {ECO:0000256|SAAS:SAAS00008728};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
GMP synthase (Glutamine-hydrolyzing) domain-containing protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAJ5_9FIRM
GMP synthase
L3_082_000G1_scaffold_25_20
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33317..33841)
DNA (525bp) protein (175aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0ANA2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC02259.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
hypothetical protein
L3_082_000G1_scaffold_25_21

Not on your lists

34025..34225
DNA (201bp) protein (67aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0AN42_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKC47793.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_082_000G1_scaffold_25_22
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34212..35288
DNA (1077bp) protein (359aa)
Phage integrase n=2 Tax=Clostridium bolteae RepID=R0C8U0_9CLOT
Site-specific recombinase phage integrase family {ECO:0000313|EMBL:CDC02257.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
Site-specific recombinase XerD
L3_082_000G1_scaffold_25_23
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35294..35626
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0BYB7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC02256.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
hypothetical protein
L3_082_000G1_scaffold_25_24
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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35619..36773
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YQU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM50780.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L3_082_000G1_scaffold_25_25
unknown

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comp(36742..37296)
DNA (555bp) protein (185aa)

This feature has no annotations

L3_082_000G1_scaffold_25_26
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37368..38498
DNA (1131bp) protein (377aa)
Plasmid recombination enzyme n=1 Tax=Blautia sp. CAG:37 RepID=R7JYL3_9FIRM
Plasmid recombination enzyme {ECO:0000313|EMBL:CDE67897.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
pre; putative plasmid recombination enzyme
L3_082_000G1_scaffold_25_27
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38519..38761
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003717A24
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERK49766.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L3_082_000G1_scaffold_25_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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38886..39212
DNA (327bp) protein (109aa)
Arsenical resistance operon repressor n=2 Tax=Bifidobacterium RepID=B3DTR8_BIFLD
arsR; arsenical resistance operon repressor
Arsenical resistance operon repressor {ECO:0000313|EMBL:ACD98537.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_082_000G1_scaffold_25_29
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39290..40303
DNA (1014bp) protein (338aa)
Putative permease family protein n=4 Tax=Clostridium difficile RepID=T2TLF9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EOS40414.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
hypothetical protein
L3_082_000G1_scaffold_25_30
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

40317..40727
DNA (411bp) protein (137aa)
Redox-active disulfide protein 2 n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1BBE2_9FIRM
Redox-active disulfide protein 2 {ECO:0000313|EMBL:EHO26683.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
hypothetical protein
Displaying items 1-30 of 181 in total

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