ggKbase home page

L3_082_000G1_scaffold_657

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_000G1_scaffold_657_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..1456)
DNA (1455bp) protein (485aa)
ntpI; V-type Na(+)-transporting ATPase I subunit (EC:3.6.3.15)
V-type H+-transporting ATPase subunit I n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9S8_9FIRM
V-type H+-transporting ATPase subunit I {ECO:0000313|EMBL:EGJ47106.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_082_000G1_scaffold_657_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1456..1770)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9S7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47105.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_082_000G1_scaffold_657_3
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2141..2704
DNA (564bp) protein (188aa)
Acetyltransferase, GNAT family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P092_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EDM98242.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
acetyltransferase
L3_082_000G1_scaffold_657_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2743..4077
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46708.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_082_000G1_scaffold_657_5
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4480..4902)
DNA (423bp) protein (141aa)
Acetyltransferase, GNAT family n=2 Tax=Oscillibacter RepID=U2QVH9_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ERK65229.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L3_082_000G1_scaffold_657_6
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4918..6249)
DNA (1332bp) protein (444aa)
MATE efflux family protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BZE2_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:EEG74520.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
putative efflux protein, MATE family
L3_082_000G1_scaffold_657_7
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6335..7156
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3B9R7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG84189.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
MerR family transcriptional regulator
L3_082_000G1_scaffold_657_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7466..8269)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD11_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46707.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_082_000G1_scaffold_657_9
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(8558..9784)
DNA (1227bp) protein (409aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
lysC; Aspartokinase (EC:2.7.2.4)
Aspartate kinase, monofunctional class n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YJJ8_9FIRM
L3_082_000G1_scaffold_657_10
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(9862..11073)
DNA (1212bp) protein (404aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
homoserine dehydrogenase (EC:1.1.1.3)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YHF8_9FIRM
L3_082_000G1_scaffold_657_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11123..11563)
DNA (441bp) protein (147aa)
Chorismate mutase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD08_9FIRM
Chorismate mutase {ECO:0000313|EMBL:EGJ46704.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_082_000G1_scaffold_657_12
unknown

Not on your lists

comp(11588..11728)
DNA (141bp) protein (47aa)

This feature has no annotations

L3_082_000G1_scaffold_657_13
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(11812..11982)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YG75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15348.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
4Fe-4S binding domain.
L3_082_000G1_scaffold_657_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12098..14530
DNA (2433bp) protein (811aa)
ATP-dependent Clp protease ATP-binding subunit ClpC n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD73_9FIRM
ATP-dependent Clp protease ATP-binding subunit ClpC {ECO:0000313|EMBL:EGJ46769.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
clpC; clpc ATPase
L3_082_000G1_scaffold_657_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14670..16103
DNA (1434bp) protein (478aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD54_9FIRM
L3_082_000G1_scaffold_657_16
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

16219..17232
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YDR1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14498.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
putative oxidoreductase
L3_082_000G1_scaffold_657_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17347..20031)
DNA (2685bp) protein (895aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46703.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative penicillin-binding protein
L3_082_000G1_scaffold_657_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20283..20600
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46701.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_082_000G1_scaffold_657_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21021..22583
DNA (1563bp) protein (521aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD04_9FIRM
putative isomerase
L3_082_000G1_scaffold_657_20
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(22643..23605)
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZKF5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15115.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
L3_082_000G1_scaffold_657_21
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23777..24853)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VX79_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ37340.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
alpha/beta hydrolase fold protein
L3_082_000G1_scaffold_657_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25001..27391)
DNA (2391bp) protein (797aa)
B12 binding domain./Pterin binding enzyme./Homocysteine S-methyltransferase. (EC:2.1.1.13)
5-methyltetrahydrofolate-homocysteine methyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDD6_9FIRM
5-methyltetrahydrofolate-homocysteine methyltransferase {ECO:0000313|EMBL:EGJ46832.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_082_000G1_scaffold_657_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27378..28064)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46831.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Vitamin B12 dependent methionine synthase activation region
L3_082_000G1_scaffold_657_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28061..28927)
DNA (867bp) protein (289aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
5,10-methylenetetrahydrofolate reductase, prokaryotic form (EC:1.5.1.20)
Methylenetetrahydrofolate reductase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDD4_9FIRM
L3_082_000G1_scaffold_657_25
unknown

Not on your lists

comp(28960..29475)
DNA (516bp) protein (172aa)

This feature has no annotations

L3_082_000G1_scaffold_657_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29494..31122)
DNA (1629bp) protein (543aa)
gamma-glutamyltransferase (EC:2.3.2.2)
Gamma-glutamyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDD3_9FIRM
Gamma-glutamyltransferase {ECO:0000313|EMBL:EGJ46829.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_082_000G1_scaffold_657_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31138..31611)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46828.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
5-nitroimidazole antibiotic resistance protein
L3_082_000G1_scaffold_657_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31655..32419)
DNA (765bp) protein (255aa)
exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDD1_9FIRM
Exodeoxyribonuclease III {ECO:0000313|EMBL:EGJ46827.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_082_000G1_scaffold_657_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32612..33625
DNA (1014bp) protein (338aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
aspartate-ammonia ligase (EC:6.3.1.1)
Aspartate--ammonia ligase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDD0_9FIRM
L3_082_000G1_scaffold_657_30
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33777..34718)
DNA (942bp) protein (314aa)
Hydrolase, alpha/beta domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NWU0_9FIRM
Hydrolase, alpha/beta domain protein {ECO:0000313|EMBL:EDM99627.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
putative hydrolase
Displaying items 1-30 of 54 in total

View Taxonomy