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L3_082_000M1_scaffold_680

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Displaying items 1-30 of 203 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_000M1_scaffold_680_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(116..1066)
DNA (951bp) protein (317aa)
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=910348 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P12b.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=972 Tax=Enterobacteriaceae RepID=ISPH_ECO24
L3_082_000M1_scaffold_680_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1068..1517)
DNA (450bp) protein (150aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
Peptidyl-prolyl cis-trans isomerase n=15 Tax=Escherichia coli RepID=F4STG7_ECOLX
FKBX-type 16KD peptidyl-prolyl cis-trans isomerase SlpA
L3_082_000M1_scaffold_680_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1625..2119)
DNA (495bp) protein (165aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1444212 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S4_C1.;"
Lipoprotein signal peptidase n=914 Tax=Enterobacteriaceae RepID=LSPA_ECO24
L3_082_000M1_scaffold_680_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2119..4935)
DNA (2817bp) protein (939aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
Isoleucine--tRNA ligase n=4 Tax=Escherichia coli RepID=F4STG5_ECOLX
ileS; isoleucyl-tRNA synthetase
L3_082_000M1_scaffold_680_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4978..5919)
DNA (942bp) protein (314aa)
ribF; riboflavin biosynthesis protein RibF (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1281269 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3718-1.;"
Riboflavin biosynthesis protein RibF n=886 Tax=Enterobacteriaceae RepID=RIBF_ECO57
L3_082_000M1_scaffold_680_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6248..6511
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1446 Tax=Bacteria RepID=RS20_ECO24
30S ribosomal protein S20
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1268998 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908573.;"
L3_082_000M1_scaffold_680_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6900..8273
DNA (1374bp) protein (458aa)
Xylose transporter n=48 Tax=Escherichia coli RepID=F4STG2_ECOLX
Putative transport protein
Sugar (Glycoside-Pentoside-Hexuronide) transporter domain protein {ECO:0000313|EMBL:KEJ63398.1}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
L3_082_000M1_scaffold_680_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8301..10340
DNA (2040bp) protein (680aa)
Alpha-xylosidase n=7 Tax=Escherichia coli RepID=F5MBE3_ECOLX
Putative glycosyl hydrolase {ECO:0000313|EMBL:EGI18001.1}; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
Putative glycosyl hydrolase
L3_082_000M1_scaffold_680_9
Escherichia coli CAG:4, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10398..11297)
DNA (900bp) protein (300aa)
Transcriptional activator NhaR n=56 Tax=Escherichia RepID=B1LFV0_ECOSM
nhaR; transcriptional activator protein
Transcriptional activator {ECO:0000313|EMBL:CDC84769.1}; TaxID=1263075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; environmental samples.;" source="Escherichia coli CAG:4.;"
L3_082_000M1_scaffold_680_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11363..12529)
DNA (1167bp) protein (389aa)
Na(+)/H(+) antiporter NhaA n=137 Tax=Escherichia RepID=NHAA_ECOL5
nhaA; pH-dependent sodium/proton antiporter
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=670897 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2362-75.;"
L3_082_000M1_scaffold_680_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12764..14023)
DNA (1260bp) protein (420aa)
Uncharacterized protein n=3 Tax=Escherichia coli RepID=L4KU68_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI53559.1}; TaxID=431946 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O150:H5 (strain SE15).;"
L3_082_000M1_scaffold_680_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14152..15645)
DNA (1494bp) protein (498aa)
Uncharacterized protein n=39 Tax=Escherichia coli RepID=D2NAX0_ECOS5
hypothetical protein
Escherichia coli O25b:H4-ST131 str. EC958 chromosome, complete genome; Uncharacterized protein {ECO:0000313|EMBL:CDN80386.1}; TaxID=1359206 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ST131.;"
L3_082_000M1_scaffold_680_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15666..16427)
DNA (762bp) protein (254aa)
Uncharacterized protein n=37 Tax=Escherichia coli RepID=D2NAW9_ECOS5
hypothetical protein
Membrane protein {ECO:0000313|EMBL:AJO81936.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L3_082_000M1_scaffold_680_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16707..16997)
DNA (291bp) protein (97aa)
Uncharacterized protein n=133 Tax=Escherichia coli RepID=L2Z618_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EOW90259.1}; TaxID=1181728 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE182.;"
L3_082_000M1_scaffold_680_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17042..17194
DNA (153bp) protein (51aa)
Regulatory protein n=2 Tax=Escherichia coli RepID=V8ITV3_ECOLX
mokC; regulatory protein for HokC, overlaps CDS of HokC
Protein hokC {ECO:0000313|EMBL:ELC92261.1}; TaxID=1181739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE193.;"
L3_082_000M1_scaffold_680_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17298..18428)
DNA (1131bp) protein (377aa)
Chaperone protein DnaJ n=3 Tax=Enterobacteriaceae RepID=Q0TLX4_ECOL5
dnaJ; chaperone protein DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1116133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021552.8.;"
L3_082_000M1_scaffold_680_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18517..20433)
DNA (1917bp) protein (639aa)
Chaperone protein DnaK n=1260 Tax=Enterobacteriaceae RepID=DNAK_ECO24
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1182725 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE146.;"
dnaK; chaperone protein dnaK
L3_082_000M1_scaffold_680_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20805..21209
DNA (405bp) protein (135aa)
UPF0412 protein YaaI n=1 Tax=Escherichia coli KTE165 RepID=L4KTA8_ECOLX
UPF0412 protein YaaI {ECO:0000256|HAMAP-Rule:MF_01372}; Flags: Precursor;; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
yaaI; hypothetical protein
L3_082_000M1_scaffold_680_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21235..21948
DNA (714bp) protein (238aa)
UPF0174 protein yaaW n=239 Tax=Escherichia RepID=E2QEA0_ECOLX
yaaW; hypothetical protein
Ubiquinol-cytochrome C chaperone family protein {ECO:0000313|EMBL:KEJ53291.1}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
L3_082_000M1_scaffold_680_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22097..22663
DNA (567bp) protein (189aa)
Inner membrane protein yaaH n=343 Tax=Escherichia RepID=E2QE99_ECOLX
yaaH; hypothetical protein
Inner membrane protein yaaH {ECO:0000313|EMBL:KEJ53290.1}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
L3_082_000M1_scaffold_680_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22868..23455)
DNA (588bp) protein (196aa)
Molybdopterin biosynthesis mog protein n=521 Tax=Escherichia RepID=E2QE98_ECOLX
mogA; molybdenum cofactor biosynthesis protein
Molybdopterin adenylyltransferase {ECO:0000313|EMBL:EMW13228.1}; TaxID=1116125 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2845650.;"
L3_082_000M1_scaffold_680_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23570..24523)
DNA (954bp) protein (318aa)
transaldolase B (EC:2.2.1.2)
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00492, ECO:0000256|RuleBase:RU004155}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00492, ECO:0000256|RuleBase:RU004155};; TaxID=1268995 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908525.;"
Transaldolase B n=547 Tax=Enterobacteriaceae RepID=TALB_ECOL6
L3_082_000M1_scaffold_680_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24802..26232
DNA (1431bp) protein (477aa)
Amino acid carrier protein n=1 Tax=Escherichia coli KTE165 RepID=L4KTA3_ECOLX
yaaJ; putative transporter
Inner membrane transport protein {ECO:0000313|EMBL:EGI17986.1}; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
L3_082_000M1_scaffold_680_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26302..27078
DNA (777bp) protein (259aa)
UPF0246 protein YaaA n=235 Tax=Escherichia RepID=YAAA_ECO7I
yaaA; hypothetical protein
UPF0246 protein YaaA {ECO:0000256|HAMAP-Rule:MF_00652}; TaxID=749527 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain MS 21-1).;"
L3_082_000M1_scaffold_680_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27118..27414)
DNA (297bp) protein (99aa)
Uncharacterized protein n=180 Tax=Escherichia coli RepID=B7MNL3_ECO81
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFJ82606.1}; TaxID=749531 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 69-1.;"
L3_082_000M1_scaffold_680_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27628..28914)
DNA (1287bp) protein (429aa)
thrC; threonine synthase (EC:4.2.3.1)
Threonine synthase n=792 Tax=Enterobacteriaceae RepID=C3TRQ2_ECOLX
Threonine synthase {ECO:0000313|EMBL:EOU95876.1}; TaxID=1169353 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE36.;"
L3_082_000M1_scaffold_680_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28915..29847)
DNA (933bp) protein (311aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=1359206 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ST131.;"
Homoserine kinase n=103 Tax=Escherichia RepID=E2QE92_ECOLX
thrB; Homoserine kinase
L3_082_000M1_scaffold_680_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29849..32311)
DNA (2463bp) protein (821aa)
ThrA {ECO:0000313|EMBL:EHU49219.1}; EC=2.7.2.4 {ECO:0000313|EMBL:EHU49219.1};; TaxID=868141 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2D.;"
thrA; Bifunctional aspartokinase / Homoserine dehydrogenase (EC:2.7.2.4 1.1.1.3)
Bifunctional aspartokinase I/homeserine dehydrogenase I n=2 Tax=Escherichia coli RepID=A1A755_ECOK1
L3_082_000M1_scaffold_680_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32671..33357)
DNA (687bp) protein (229aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
lasT; RNA methyltransferase (EC:2.1.1.-)
RNA methyltransferase, TrmH family, group 1 n=1 Tax=Escherichia coli KTE165 RepID=L4KS78_ECOLX
L3_082_000M1_scaffold_680_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33993..34709
DNA (717bp) protein (239aa)
Aerobic respiration control protein ArcA n=1411 Tax=Enterobacteriaceae RepID=ARCA_ECO57
aerobic respiration control protein ArcA
Aerobic respiration control protein ArcA {ECO:0000313|EMBL:ELC12317.1}; TaxID=1169330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE10.;"
Displaying items 1-30 of 203 in total

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