ggKbase home page

L3_082_090G1_scaffold_3

Search features with annotation key words

Displaying items 1-30 of 369 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_3_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..915)
DNA (915bp) protein (305aa)
Uncharacterized protein n=14 Tax=Escherichia coli RepID=U7BKB7_ECOLX
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EGI17568.1}; Flags: Fragment;; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
L3_082_090G1_scaffold_3_2
Escherichia coli CAG:4, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1344..1514)
DNA (171bp) protein (57aa)
Phenylacetic acid degradation protein n=45 Tax=Escherichia RepID=D2NIA3_ECOS5
paaY; Phenylacetic acid degradation protein
Phenylacetic acid degradation protein {ECO:0000313|EMBL:CDC77327.1}; TaxID=1263075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; environmental samples.;" source="Escherichia coli CAG:4.;"
L3_082_090G1_scaffold_3_3
Escherichia coli CAG:4, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1588..1821
DNA (234bp) protein (78aa)
Transcriptional activator feaR n=2 Tax=Escherichia coli RepID=T7RMY3_ECOLX
DNA-binding transcriptional dual regulator {ECO:0000313|EMBL:CDC77324.1}; TaxID=1263075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; environmental samples.;" source="Escherichia coli CAG:4.;"
feaR; DNA-binding transcriptional activator FeaR
L3_082_090G1_scaffold_3_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1993..2319)
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=2 Tax=Escherichia coli RepID=F4SXR9_ECOLX
ydbL; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESD42920.1}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
L3_082_090G1_scaffold_3_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2327..2512)
DNA (186bp) protein (62aa)
Uncharacterized protein YnbE n=953 Tax=Enterobacteriaceae RepID=YNBE_ECOL6
ynbE; hypothetical protein
YnbE-like lipofamily protein {ECO:0000313|EMBL:KEJ77646.1}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
L3_082_090G1_scaffold_3_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2509..5148)
DNA (2640bp) protein (880aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=L4KLA3_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:ESD42918.1}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
ydbH; hypothetical protein
L3_082_090G1_scaffold_3_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5356..6345
DNA (990bp) protein (330aa)
D-lactate dehydrogenase {ECO:0000313|EMBL:KEJ59939.1}; EC=1.1.1.28 {ECO:0000313|EMBL:KEJ59939.1};; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
D-lactate dehydrogenase n=1131 Tax=Enterobacteriaceae RepID=C3TB72_ECOLX
ldhA; D-lactate dehydrogenase
L3_082_090G1_scaffold_3_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6456..6878
DNA (423bp) protein (141aa)
Heat shock protein hslJ n=376 Tax=Escherichia RepID=E2QLV9_ECOLX
hslJ; heat-inducible protein
Heat shock protein hslJ {ECO:0000313|EMBL:KEJ59938.1}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
L3_082_090G1_scaffold_3_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6875..7141)
DNA (267bp) protein (89aa)
Uncharacterized protein n=50 Tax=Escherichia coli RepID=D2NI97_ECOS5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJO83416.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L3_082_090G1_scaffold_3_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7415..10939
DNA (3525bp) protein (1175aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
Pyruvate-flavodoxin oxidoreductase n=10 Tax=Escherichia coli RepID=L2XFH6_ECOLX
Pyruvate-flavodoxin oxidoreductase
L3_082_090G1_scaffold_3_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11305..12438
DNA (1134bp) protein (378aa)
Outer membrane protein N n=5 Tax=Escherichia coli RepID=F4SXR2_ECOLX
Outer membrane protein N {ECO:0000313|EMBL:EGI17558.1}; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
outer membrane protein porin OmpN
L3_082_090G1_scaffold_3_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12579..13013
DNA (435bp) protein (145aa)
Universal stress protein F n=958 Tax=Enterobacteriaceae RepID=USPF_ECO57
ynaF; hypothetical protein
Universal stress family protein {ECO:0000313|EMBL:ESA83653.1}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
L3_082_090G1_scaffold_3_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13200..13469
DNA (270bp) protein (90aa)
Uncharacterized protein n=11 Tax=Escherichia coli RepID=E9UGH2_ECOLX
SitD protein {ECO:0000313|EMBL:EGI17556.1}; Flags: Fragment;; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
hypothetical protein
L3_082_090G1_scaffold_3_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15338..16273
DNA (936bp) protein (312aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Escherichia coli KTE165 RepID=L4KK70_ECOLX
C32 tRNA thiolase
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000256|HAMAP-Rule:MF_01850}; TaxID=1359206 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ST131.;"
L3_082_090G1_scaffold_3_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16401..17774)
DNA (1374bp) protein (458aa)
ATP-dependent RNA helicase DbpA {ECO:0000256|HAMAP-Rule:MF_00965}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00965};; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
ATP-dependent RNA helicase DbpA n=12 Tax=Escherichia coli RepID=F4SXQ7_ECOLX
dbpA; ATP-dependent RNA helicase, specific for 23S rRNA
L3_082_090G1_scaffold_3_16
Escherichia sp. KTE11, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17804..17977)
DNA (174bp) protein (58aa)
Uncharacterized protein n=609 Tax=Escherichia RepID=J7R0K2_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ELC19104.1}; TaxID=1169331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE11.;"
L3_082_090G1_scaffold_3_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18252..19235)
DNA (984bp) protein (328aa)
Zinc transport protein ZntB n=1222 Tax=Enterobacteriaceae RepID=ZNTB_ECO24
zntB; zinc transport protein ZntB
Zinc transport protein ZntB {ECO:0000256|HAMAP-Rule:MF_01565, ECO:0000256|SAAS:SAAS00010762}; TaxID=1444137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S3_C1.;"
L3_082_090G1_scaffold_3_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19490..20722
DNA (1233bp) protein (411aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=3 Tax=Escherichia coli RepID=L4KL20_ECOLX
Putative GGDEF domain protein {ECO:0000313|EMBL:EGI17551.1}; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
diguanylate cyclase
L3_082_090G1_scaffold_3_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20743..21306)
DNA (564bp) protein (188aa)
Uncharacterized protein ydal n=155 Tax=Escherichia RepID=E2QLU9_ECOLX
ydaL; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE07089.1}; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
L3_082_090G1_scaffold_3_20
Escherichia coli CAG:4, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21501..23012)
DNA (1512bp) protein (504aa)
Drug:H+ antiporter-2 (14 Spanner) (DHA2) family drug resistance MFS transporter n=3 Tax=Escherichia RepID=L4KM97_ECOLX
Multidrug resistance protein B {ECO:0000313|EMBL:CDC77303.1}; TaxID=1263075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; environmental samples.;" source="Escherichia coli CAG:4.;"
multidrug efflux protein
L3_082_090G1_scaffold_3_21
Escherichia coli CAG:4, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23012..24040)
DNA (1029bp) protein (343aa)
Multidrug resistance protein A n=3 Tax=Escherichia RepID=L4KL87_ECOLX
Putative HlyD family secretion protein {ECO:0000313|EMBL:CDC77302.1}; TaxID=1263075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; environmental samples.;" source="Escherichia coli CAG:4.;"
auxiliary transport protein, membrane fusion protein (MFP) family
L3_082_090G1_scaffold_3_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24137..24952
DNA (816bp) protein (272aa)
Uncharacterized protein n=155 Tax=Escherichia RepID=D2NI84_ECOS5
hypothetical protein
AraC family transcriptional regulator {ECO:0000313|EMBL:CKI13678.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L3_082_090G1_scaffold_3_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25495..26010
DNA (516bp) protein (172aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; O-6-methylguanine-DNA-alkyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; TaxID=1182658 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE51.;"
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Escherichia coli KTE165 RepID=L4KL14_ECOLX
ogt; O-6-alkylguanine-DNA:cysteine-proteinmethyltransferase
L3_082_090G1_scaffold_3_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26205..26957
DNA (753bp) protein (251aa)
CRP/FNR family transcriptional regulator n=1 Tax=Escherichia coli B088 RepID=D6HWA1_ECOLX
fumarate and nitrate reduction regulatory protein
Electron transport regulator A {ECO:0000313|EMBL:EHU41916.1}; TaxID=868139 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2B.;"
L3_082_090G1_scaffold_3_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27109..28059
DNA (951bp) protein (317aa)
Universal stress protein E n=1135 Tax=Enterobacteriaceae RepID=USPE_ECO57
universal stress protein E UspE
Universal stress protein E {ECO:0000313|EMBL:KDZ38865.1}; TaxID=1444137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S3_C1.;"
L3_082_090G1_scaffold_3_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28109..28366)
DNA (258bp) protein (86aa)
Uncharacterized protein YnaJ n=1383 Tax=Enterobacteriaceae RepID=YNAJ_ECO57
hypothetical protein
Inner membrane protein {ECO:0000313|EMBL:EQN28593.1}; TaxID=1280961 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 6 (3-8296502).;"
L3_082_090G1_scaffold_3_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28610..29641
DNA (1032bp) protein (344aa)
Uncharacterized protein n=47 Tax=Escherichia coli RepID=D2NI78_ECOS5
ynaI; hypothetical protein
Mechanosensitive ion channel {ECO:0000313|EMBL:CDL42824.1}; TaxID=1432559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC41.;"
L3_082_090G1_scaffold_3_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29692..31305)
DNA (1614bp) protein (538aa)
Periplasmic murein peptide-binding protein n=1 Tax=Escherichia coli KTE165 RepID=L4KL10_ECOLX
murein tripeptide transport protein
Periplasmic murein peptide-binding protein {ECO:0000313|EMBL:EQN28591.1}; TaxID=1280961 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 6 (3-8296502).;"
L3_082_090G1_scaffold_3_29
Escherichia coli CAG:4, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31847..32383
DNA (537bp) protein (179aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=L4KK58_ECOLX
X-Pro dipeptidyl-peptidase {ECO:0000313|EMBL:CDC77290.1}; TaxID=1263075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; environmental samples.;" source="Escherichia coli CAG:4.;"
hydrolase
L3_082_090G1_scaffold_3_30
Escherichia coli CAG:4, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32454..32576
DNA (123bp) protein (41aa)
Uncharacterized protein n=11 Tax=Escherichia coli RepID=L2XFF5_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:CDC77288.1}; TaxID=1263075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; environmental samples.;" source="Escherichia coli CAG:4.;"
putative NAD(P) binding enzyme
Displaying items 1-30 of 369 in total

View Taxonomy