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L3_082_090G1_scaffold_10

Search features with annotation key words

Displaying items 1-30 of 248 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_10_1
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(288..917)
-----------------
DNA (630bp)
protein (210aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G2J1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR48120.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
hypothetical protein
L3_082_090G1_scaffold_10_2
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(914..1837)
-----------------
DNA (924bp)
protein (308aa)
Transcription antiterminator LicT n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TYW3_9FIRM
Transcription antiterminator LicT {ECO:0000313|EMBL:CCZ68534.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
arbG1; beta-glucoside operon antiterminator
L3_082_090G1_scaffold_10_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1792..3210)
-----------------
DNA (1419bp)
protein (473aa)
Glycosyl hydrolase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UID1_9FIRM
Glycosyl hydrolase {ECO:0000313|EMBL:CCZ68532.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
glycosyl hydrolase
L3_082_090G1_scaffold_10_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3229..5112)
-----------------
DNA (1884bp)
protein (628aa)
PTS system IIabc component n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBM1_9FIRM
PTS system IIabc component {ECO:0000313|EMBL:CCZ68531.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
PTS system subunit IIABC
L3_082_090G1_scaffold_10_5
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5341..5889)
-----------------
DNA (549bp)
protein (183aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TS41_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68530.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Membrane-associated phospholipid phosphatase
L3_082_090G1_scaffold_10_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5905..6843)
-----------------
DNA (939bp)
protein (313aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
tRNA-dihydrouridine synthase n=4 Tax=Clostridiales RepID=A7B718_RUMGN
hypothetical protein
L3_082_090G1_scaffold_10_7
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6953..9133)
-----------------
DNA (2181bp)
protein (727aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TS06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68528.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_082_090G1_scaffold_10_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9130..11673)
-----------------
DNA (2544bp)
protein (848aa)
YhgE/Pip domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B720_RUMGN
YhgE/Pip domain protein {ECO:0000313|EMBL:EDN76282.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_082_090G1_scaffold_10_9
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11800..13170)
-----------------
DNA (1371bp)
protein (457aa)
MATE efflux family protein n=4 Tax=Clostridiales RepID=A7B721_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49044.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
putative efflux protein, MATE family
L3_082_090G1_scaffold_10_10
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13406..15127
-----------------
DNA (1722bp)
protein (574aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridiales RepID=A7B723_RUMGN
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCZ68525.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ABC-type multidrug transport system, ATPase and permease components
L3_082_090G1_scaffold_10_11
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15423..15590)
-----------------
DNA (168bp)
protein (56aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B725_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49047.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L3_082_090G1_scaffold_10_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15752..16777)
-----------------
DNA (1026bp)
protein (342aa)
branched-chain amino acid aminotransferase, group II (EC:2.6.1.42)
Branched-chain-amino-acid transaminase n=4 Tax=Clostridiales RepID=A7B726_RUMGN
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:ETD16275.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_082_090G1_scaffold_10_13
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16875..17387)
-----------------
DNA (513bp)
protein (171aa)
acetolactate synthase, small subunit (EC:2.2.1.6)
Acetolactate synthase, small subunit n=4 Tax=Clostridiales RepID=A7B727_RUMGN
Acetolactate synthase {ECO:0000313|EMBL:EGN49049.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_082_090G1_scaffold_10_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17402..19120)
-----------------
DNA (1719bp)
protein (573aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase n=4 Tax=Clostridiales RepID=A7B728_RUMGN
L3_082_090G1_scaffold_10_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19295..20125)
-----------------
DNA (831bp)
protein (277aa)
ABC 3 transport family protein n=3 Tax=Clostridiales RepID=A7B729_RUMGN
ABC 3 transport family protein {ECO:0000313|EMBL:EDN76291.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
ABC-type Mn2+/Zn2+ transport systems, permease components
L3_082_090G1_scaffold_10_16
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20118..20828)
-----------------
DNA (711bp)
protein (237aa)
ABC-type Mn/Zn transport systems, ATPase component (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=4 Tax=Clostridiales RepID=A7B730_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49052.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_082_090G1_scaffold_10_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20828..21910)
-----------------
DNA (1083bp)
protein (361aa)
ABC transporter, substrate-binding protein n=2 Tax=Clostridiales RepID=A7B731_RUMGN
ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EDN76293.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
ABC-type metal ion transport system, periplasmic component/surface adhesin
L3_082_090G1_scaffold_10_18
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21867..22358)
-----------------
DNA (492bp)
protein (164aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=3 Tax=Clostridiales RepID=F7JVG4_9FIRM
L3_082_090G1_scaffold_10_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22388..23236)
-----------------
DNA (849bp)
protein (283aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Thymidylate synthase n=2 Tax=Lachnospiraceae RepID=F7JVG5_9FIRM
ThyA; thymidylate synthase
L3_082_090G1_scaffold_10_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23252..24535)
-----------------
DNA (1284bp)
protein (428aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=2 Tax=Clostridiales RepID=A7B734_RUMGN
L3_082_090G1_scaffold_10_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24668..25723)
-----------------
DNA (1056bp)
protein (352aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TRZ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68513.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_082_090G1_scaffold_10_22
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(26308..28107)
-----------------
DNA (1800bp)
protein (600aa)
aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UIB7_9FIRM
Aspartate--tRNA ligase {ECO:0000313|EMBL:CCZ68512.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_082_090G1_scaffold_10_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(28130..29395)
-----------------
DNA (1266bp)
protein (422aa)
Histidine--tRNA ligase {ECO:0000313|EMBL:EDN76301.1}; EC=6.1.1.21 {ECO:0000313|EMBL:EDN76301.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B739_RUMGN
L3_082_090G1_scaffold_10_24
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29386..30816)
-----------------
DNA (1431bp)
protein (477aa)
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases (EC:1.3.99.22)
Coproporphyrinogen dehydrogenase HemZ n=2 Tax=Lachnospiraceae RepID=V8BND0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49060.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_082_090G1_scaffold_10_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30834..31454)
-----------------
DNA (621bp)
protein (207aa)
Metallo-beta-lactamase domain protein n=3 Tax=Lachnospiraceae RepID=A7B741_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16288.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Zn-dependent hydrolases, including glyoxylases
L3_082_090G1_scaffold_10_26
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31461..33767)
-----------------
DNA (2307bp)
protein (769aa)
(p)ppGpp synthetase, RelA/SpoT family (EC:2.7.6.5)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TRZ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68508.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_082_090G1_scaffold_10_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33824..35536)
-----------------
DNA (1713bp)
protein (571aa)
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EDN76305.1}; EC=3.1.-.- {ECO:0000313|EMBL:EDN76305.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
exonuclease RecJ (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B743_RUMGN
L3_082_090G1_scaffold_10_28
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35819..41119)
-----------------
DNA (5301bp)
protein (1767aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BP78_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16291.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
calx-beta domain-containing protein
L3_082_090G1_scaffold_10_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(41327..43600)
-----------------
DNA (2274bp)
protein (758aa)
Export membrane protein SecD n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B746_RUMGN
Export membrane protein SecD {ECO:0000313|EMBL:EDN76308.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
protein translocase subunit secF/protein translocase subunit secD
L3_082_090G1_scaffold_10_30
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43587..45008)
-----------------
DNA (1422bp)
protein (474aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TM85_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66868.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
Displaying items 1-30 of 248 in total

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