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L3_082_090G1_scaffold_29

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Displaying items 1-30 of 165 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_29_1
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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134..1843
DNA (1710bp) protein (570aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=R0AKG3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ33239.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
transposase IS4 family protein
L3_082_090G1_scaffold_29_2
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2387..3022
DNA (636bp) protein (212aa)
Transposase, IS4 family n=6 Tax=Clostridiales RepID=A7B108_RUMGN
Transposase, IS4 family {ECO:0000313|EMBL:EDN78497.1}; Uncharacterized protein {ECO:0000313|EMBL:EDN76645.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_082_090G1_scaffold_29_3
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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3019..3471
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82397.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
hypothetical protein
L3_082_090G1_scaffold_29_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3534..4955
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68651.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_082_090G1_scaffold_29_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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5178..7430
DNA (2253bp) protein (751aa)
formate acetyltransferase 1 (EC:2.3.1.54)
Formate C-acetyltransferase n=3 Tax=Lachnospiraceae RepID=A7B374_RUMGN
Formate acetyltransferase {ECO:0000313|EMBL:EGN43801.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_082_090G1_scaffold_29_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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7508..8236
DNA (729bp) protein (243aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Pyruvate formate-lyase 1-activating enzyme n=4 Tax=Clostridiales RepID=A7B375_RUMGN
pyruvate formate-lyase activating enzyme
L3_082_090G1_scaffold_29_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8289..8450)
DNA (162bp) protein (54aa)
Rubredoxin n=4 Tax=Clostridiales RepID=A7B376_RUMGN
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
rubredoxin
L3_082_090G1_scaffold_29_8
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8753..9907
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UIM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68657.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_082_090G1_scaffold_29_9
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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10115..10603
DNA (489bp) protein (163aa)
Transcriptional regulator, MarR family n=4 Tax=Clostridiales RepID=A7B379_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43797.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
MarR-like transcriptional regulator
L3_082_090G1_scaffold_29_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10622..12856
DNA (2235bp) protein (745aa)
ABC transporter, ATP-binding protein n=3 Tax=Lachnospiraceae RepID=A7B380_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD21071.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ABC-type multidrug transport system, ATPase and permease components
L3_082_090G1_scaffold_29_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12849..14672
DNA (1824bp) protein (608aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TSE4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68660.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ABC-type multidrug transport system, ATPase and permease components
L3_082_090G1_scaffold_29_12
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14772..15275
DNA (504bp) protein (168aa)
Cyclic pyranopterin monophosphate synthase accessory protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBY0_9FIRM
Cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
GTP cyclohydrolase subunit MoaC
L3_082_090G1_scaffold_29_13
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15272..15772
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UIM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68662.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
molybdenum cofactor synthesis domain
L3_082_090G1_scaffold_29_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15745..16725
DNA (981bp) protein (327aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Cyclic pyranopterin monophosphate synthase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TSB9_9FIRM
GTP cyclohydrolase subunit MoaA
L3_082_090G1_scaffold_29_15
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16732..17175
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TZ80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68664.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_082_090G1_scaffold_29_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17267..18223
DNA (957bp) protein (319aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TSE9_9FIRM
L3_082_090G1_scaffold_29_17
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18240..18980
DNA (741bp) protein (247aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBY4_9FIRM
L3_082_090G1_scaffold_29_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19020..20177
DNA (1158bp) protein (386aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UIN5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68667.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_082_090G1_scaffold_29_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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20225..21406
DNA (1182bp) protein (394aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
tRNA sulfurtransferase ThiI n=3 Tax=Lachnospiraceae RepID=V8C1V1_RUMGN
thiazole biosynthesis/tRNA modification protein ThiI
L3_082_090G1_scaffold_29_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21459..21692)
DNA (234bp) protein (78aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B391_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43786.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
PTS HPr component phosphorylation site.
L3_082_090G1_scaffold_29_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21817..23109
DNA (1293bp) protein (431aa)
tRNA methylthiotransferase YqeV n=4 Tax=Clostridiales RepID=A7B392_RUMGN
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:EGN43785.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
MiaB-like tRNA modifying enzyme
L3_082_090G1_scaffold_29_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23217..23480
DNA (264bp) protein (88aa)
UPF0297 protein RUMGNA_02021 n=4 Tax=Clostridiales RepID=A7B393_RUMGN
UPF0297 protein HMPREF1201_01065 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_082_090G1_scaffold_29_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23487..23933
DNA (447bp) protein (149aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
YqgF family RNAse H domain-containing protein n=4 Tax=Clostridiales RepID=V8C0Z3_RUMGN
conserved hypothetical protein TIGR00250
L3_082_090G1_scaffold_29_24
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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23959..24219
DNA (261bp) protein (87aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B395_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43782.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Protein of unknown function (DUF1292).
L3_082_090G1_scaffold_29_25
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24255..24737
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TZ89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68674.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Fe2+/Zn2+ uptake regulation proteins
L3_082_090G1_scaffold_29_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24761..26425
DNA (1665bp) protein (555aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B397_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD21055.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
putative hydrolase of the metallo-beta-lactamase superfamily protein
L3_082_090G1_scaffold_29_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26429..27082
DNA (654bp) protein (218aa)
O-methyltransferase n=4 Tax=Clostridiales RepID=A7B398_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43779.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted O-methyltransferase
L3_082_090G1_scaffold_29_28
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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27084..28316
DNA (1233bp) protein (411aa)
Collagenase and related proteases (EC:3.4.-.-)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UIP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68677.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_082_090G1_scaffold_29_29
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28290..28916)
DNA (627bp) protein (209aa)
RNA polymerase sigma factor n=4 Tax=Clostridiales RepID=A7B3A0_RUMGN
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
L3_082_090G1_scaffold_29_30
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29191..30714
DNA (1524bp) protein (508aa)
Mg chelatase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TZ95_9FIRM
Mg chelatase {ECO:0000313|EMBL:CCZ68679.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Mg chelatase-related protein
Displaying items 1-30 of 165 in total

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