ggKbase home page

L3_082_090G1_scaffold_34

Search features with annotation key words

Displaying items 1-30 of 129 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_34_1
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

302..763
DNA (462bp) protein (154aa)
Uncharacterized protein n=2 Tax=Bacteroidales RepID=K0WRT6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EJZ62012.1}; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
transcriptional regulator
L3_082_090G1_scaffold_34_2
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(825..2192)
DNA (1368bp) protein (456aa)
MATE efflux family protein n=1 Tax=Barnesiella intestinihominis YIT 11860 RepID=K0WRK0_9PORP
MATE efflux family protein {ECO:0000313|EMBL:EJZ62013.1}; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
multidrug transporter MatE
L3_082_090G1_scaffold_34_3
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2211..4022)
DNA (1812bp) protein (604aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Barnesiella intestinihominis YIT 11860 RepID=K0X369_9PORP
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
L3_082_090G1_scaffold_34_4
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4042..4524)
DNA (483bp) protein (161aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
N5-carboxyaminoimidazole ribonucleotide mutase n=2 Tax=Bacteroidales RepID=K0XDI2_9PORP
phosphoribosylaminoimidazole carboxylase
L3_082_090G1_scaffold_34_5
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4574..5188)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:20 RepID=R5ENM7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCX94038.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
hypothetical protein
L3_082_090G1_scaffold_34_6
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5210..6679)
DNA (1470bp) protein (490aa)
RNA polymerase sigma-54 factor n=2 Tax=Bacteroidales RepID=K0WRU3_9PORP
RNA polymerase sigma-54 factor {ECO:0000313|EMBL:CCX94037.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
RNA polymerase sigma54 factor
L3_082_090G1_scaffold_34_7
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6737..6886
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Barnesiella intestinihominis YIT 11860 RepID=K0WRK4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EJZ62018.1}; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
L3_082_090G1_scaffold_34_8
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7411..9579)
DNA (2169bp) protein (723aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Bacteroides sp. CAG:20 RepID=R5F1C7_9BACE
polynucleotide phosphorylase
L3_082_090G1_scaffold_34_9
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10032..11171
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:20 RepID=R5EMZ3_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCX94035.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
hypothetical protein
L3_082_090G1_scaffold_34_10
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11413..11883
DNA (471bp) protein (157aa)
Transcription elongation factor GreA n=2 Tax=Bacteroidales RepID=K0WUX6_9PORP
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
transcription elongation factor GreA
L3_082_090G1_scaffold_34_11
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12002..12610)
DNA (609bp) protein (203aa)
Ser/Thr phosphatase family protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1P9E4_9BACT
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EFB36712.1}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
metallophosphoesterase
L3_082_090G1_scaffold_34_12
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists

comp(12603..13871)
DNA (1269bp) protein (423aa)
Metallo-beta-lactamase domain protein n=1 Tax=Prevotella sp. CAG:732 RepID=R6XS34_9BACT
beta-lactamase domain-containing protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
L3_082_090G1_scaffold_34_13
Prevotella sp. CAG:1320, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13877..14791)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Prevotella sp. CAG:1320 RepID=R6E2T4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDA94075.1}; TaxID=1262922 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:1320.;"
L3_082_090G1_scaffold_34_14
unknown

Not on your lists

comp(14821..15279)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Prevotella baroniae F0067 RepID=U2P2Y9_9BACT
L3_082_090G1_scaffold_34_15
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15413..15763)
DNA (351bp) protein (117aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
Uncharacterized protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1P997_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EFB36708.1}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
L3_082_090G1_scaffold_34_16
Prevotella oulorum, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15735..16682)
DNA (948bp) protein (316aa)
Putative uncharacterized protein n=1 Tax=Prevotella oulorum F0390 RepID=G1WCL3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EGV30555.1}; TaxID=702438 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella oulorum F0390.;"
hypothetical protein
L3_082_090G1_scaffold_34_17
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16995..17390
DNA (396bp) protein (132aa)
Uncharacterized protein n=2 Tax=Bacteroidales RepID=K0WRV3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX94033.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
HIT family hydrolase
L3_082_090G1_scaffold_34_18
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17496..18737)
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:20 RepID=R5EZS6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCX94032.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
membrane protein
L3_082_090G1_scaffold_34_19
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18747..19082)
DNA (336bp) protein (112aa)
Ribosome-binding factor A n=2 Tax=Bacteroidales RepID=K0X382_9PORP
Ribosome-binding factor A {ECO:0000313|EMBL:CCX94031.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
ribosome-binding factor A
L3_082_090G1_scaffold_34_20
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19134..19769)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:20 RepID=R5EMY9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCX94030.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
O-methyltransferase
L3_082_090G1_scaffold_34_21
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19766..21229)
DNA (1464bp) protein (488aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
Pyruvate kinase n=2 Tax=Bacteroidales RepID=K0WUY3_9PORP
pyruvate kinase
L3_082_090G1_scaffold_34_22
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21241..21666)
DNA (426bp) protein (142aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
3-dehydroquinate dehydratase n=1 Tax=Bacteroides sp. CAG:20 RepID=R5ENL7_9BACE
3-dehydroquinate dehydratase
L3_082_090G1_scaffold_34_23
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21848..22759
DNA (912bp) protein (304aa)
Tyrosine recombinase XerC n=1 Tax=Bacteroides sp. CAG:20 RepID=R5EZS1_9BACE
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
integrase
L3_082_090G1_scaffold_34_24
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22923..24605
DNA (1683bp) protein (561aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:20 RepID=R5F1B7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCX94026.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
hypothetical protein
L3_082_090G1_scaffold_34_25
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24772..27219
DNA (2448bp) protein (816aa)
Uncharacterized protein n=1 Tax=Barnesiella intestinihominis YIT 11860 RepID=K0XDK1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EJZ62030.1}; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
membrane protein
L3_082_090G1_scaffold_34_26
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27230..27955
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Barnesiella intestinihominis YIT 11860 RepID=K0WUZ1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EJZ62031.1}; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
hypothetical protein
L3_082_090G1_scaffold_34_27
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28047..28970)
DNA (924bp) protein (308aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
Riboflavin biosynthesis protein RibF n=1 Tax=Bacteroides sp. CAG:20 RepID=R5ENL5_9BACE
riboflavin kinase
L3_082_090G1_scaffold_34_28
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28960..29604)
DNA (645bp) protein (215aa)
HAD hydrolase family IA n=1 Tax=Bacteroides sp. CAG:20 RepID=R5EZR8_9BACE
HAD hydrolase family IA {ECO:0000313|EMBL:CCX94022.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_082_090G1_scaffold_34_29
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31188..31826
DNA (639bp) protein (213aa)
RNA polymerase sigma-70 factor, expansion family 1 n=2 Tax=Bacteroidales RepID=K0X393_9PORP
RNA polymerase sigma-70 factor expansion family 1 {ECO:0000313|EMBL:CCX94021.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, Bacteroides expansion family 1
L3_082_090G1_scaffold_34_30
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31895..32932
DNA (1038bp) protein (346aa)
Uncharacterized protein n=2 Tax=Bacteroidales RepID=K0XDL0_9PORP
Putative anti-sigma factor {ECO:0000313|EMBL:CCX94020.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
Fe2+-dicitrate sensor, membrane component
Displaying items 1-30 of 129 in total

View Taxonomy