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L3_082_090G1_scaffold_62

Search features with annotation key words

Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_62_1
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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101..880
DNA (780bp) protein (260aa)
General secretion pathway domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FMH9_9CLOT
General secretion pathway domain protein {ECO:0000313|EMBL:EEA82784.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATPase AAA
L3_082_090G1_scaffold_62_2

Not on your lists

comp(1043..1159)
DNA (117bp) protein (39aa)
Integrase n=1 Tax=Clostridium sp. (strain SY8519) RepID=F7V1Z5_CLOSS
Uncultured bacterium extrachromosomal DNA RGI00926 {ECO:0000313|EMBL:CDL66296.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
XerC; integrase
L3_082_090G1_scaffold_62_3
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1359..1607)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6ER12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA99271.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
L3_082_090G1_scaffold_62_4
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1631..2116)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YDD0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD62578.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
Predicted transcriptional regulators
L3_082_090G1_scaffold_62_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2306..3136)
DNA (831bp) protein (277aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B1D0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43628.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_082_090G1_scaffold_62_6
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3338..3793)
DNA (456bp) protein (152aa)
Peroxiredoxin (EC:1.11.1.15)
Antioxidant, AhpC/TSA family n=3 Tax=Lachnospiraceae RepID=A7B1C8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17916.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_082_090G1_scaffold_62_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3840..5213)
DNA (1374bp) protein (458aa)
MATE efflux family protein n=3 Tax=Lachnospiraceae RepID=A7B1C7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17917.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
MATE efflux family protein
L3_082_090G1_scaffold_62_8
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5223..6095)
DNA (873bp) protein (291aa)
Aldose 1-epimerase n=3 Tax=Lachnospiraceae RepID=A7B1C6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43631.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Galactose mutarotase and related enzymes
L3_082_090G1_scaffold_62_9
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6206..7378)
DNA (1173bp) protein (391aa)
Trigger factor n=3 Tax=Clostridiales RepID=F7JTG1_9FIRM
Trigger factor {ECO:0000256|RuleBase:RU003914}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
trigger factor
L3_082_090G1_scaffold_62_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7516..8994)
DNA (1479bp) protein (493aa)
Cardiolipin synthase {ECO:0000256|HAMAP-Rule:MF_01916}; Short=CL synthase {ECO:0000256|HAMAP-Rule:MF_01916};; EC=2.7.8.- {ECO:0000256|HAMAP-Rule:MF_01916};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
cardiolipin synthetase 2 (EC:2.7.8.-)
Cardiolipin synthase n=2 Tax=Ruminococcus gnavus RepID=A7B1C4_RUMGN
L3_082_090G1_scaffold_62_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9153..9605
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TVU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67439.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Protein of unknown function (DUF1628).
L3_082_090G1_scaffold_62_12
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9653..10114)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TNS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67438.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_082_090G1_scaffold_62_13
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10125..10955)
DNA (831bp) protein (277aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=4 Tax=Clostridiales RepID=A7B1C1_RUMGN
L3_082_090G1_scaffold_62_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10967..11980)
DNA (1014bp) protein (338aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=4 Tax=Clostridiales RepID=A7B1C0_RUMGN
L3_082_090G1_scaffold_62_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12065..15538)
DNA (3474bp) protein (1158aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BT16_RUMGN
L3_082_090G1_scaffold_62_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15655..15891)
DNA (237bp) protein (79aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B1B8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17926.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_082_090G1_scaffold_62_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15962..16783)
DNA (822bp) protein (274aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TNS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17927.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_082_090G1_scaffold_62_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16830..17621)
DNA (792bp) protein (264aa)
Acyl-ACP thioesterase (EC:3.1.2.14)
Acyl-ACP thioesterase n=2 Tax=Clostridiales RepID=A7B1B6_RUMGN
Acyl-ACP thioesterase {ECO:0000313|EMBL:EDN78038.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_082_090G1_scaffold_62_19
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17563..18741)
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U8H0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67431.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
cation diffusion facilitator family transporter
L3_082_090G1_scaffold_62_20
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18769..19395)
DNA (627bp) protein (209aa)
Putative stage II sporulation protein R n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TP54_9FIRM
Putative stage II sporulation protein R {ECO:0000313|EMBL:CCZ67430.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
stage II sporulation protein R
L3_082_090G1_scaffold_62_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19505..20176)
DNA (672bp) protein (224aa)
FCD domain protein n=3 Tax=Lachnospiraceae RepID=A7B1B3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43645.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
transcriptional regulator, GntR family
L3_082_090G1_scaffold_62_22
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20178..21053)
DNA (876bp) protein (292aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TNR8_9FIRM
L3_082_090G1_scaffold_62_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21134..22696)
DNA (1563bp) protein (521aa)
LysM domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1B1_RUMGN
LysM domain protein {ECO:0000313|EMBL:EDN78033.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
LysM domain.
L3_082_090G1_scaffold_62_24
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22706..23140)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U8G3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67426.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_082_090G1_scaffold_62_25
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23310..24044
DNA (735bp) protein (245aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC:2.3.1.51)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TP47_9FIRM
L3_082_090G1_scaffold_62_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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24065..25513
DNA (1449bp) protein (483aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
putative nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase n=4 Tax=Clostridiales RepID=A7B1A8_RUMGN
L3_082_090G1_scaffold_62_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25528..26583
DNA (1056bp) protein (352aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=4 Tax=Clostridiales RepID=A7B1A7_RUMGN
L3_082_090G1_scaffold_62_28
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26611..27981
DNA (1371bp) protein (457aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UEZ1_9FIRM
L3_082_090G1_scaffold_62_29
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27985..28794
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U8F9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67421.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
HAD-superfamily hydrolase, subfamily IIB
L3_082_090G1_scaffold_62_30
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28903..30411)
DNA (1509bp) protein (503aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BT54_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43655.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
peptidase S41
Displaying items 1-30 of 118 in total

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