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L3_082_090G1_scaffold_143

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_143_1
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..283
DNA (282bp) protein (94aa)
tuf; tuf protein translation Elongation Factor Tu (EF-TU) (EC:2.7.7.4)
Elongation factor Tu n=7 Tax=Bifidobacterium RepID=B6XXF8_9BIFI
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
L3_082_090G1_scaffold_143_2
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

464..1027
DNA (564bp) protein (188aa)
Elongation factor P n=2 Tax=Bifidobacterium RepID=A7A4T3_BIFAD
Translation elongation factor P
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_082_090G1_scaffold_143_3
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1049..1492
DNA (444bp) protein (148aa)
N utilization substance protein B homolog n=2 Tax=Bifidobacterium RepID=A7A4T4_BIFAD
Transcription termination protein NusB
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_082_090G1_scaffold_143_4
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1580..2797
DNA (1218bp) protein (406aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
Carbamoyl-phosphate synthase small chain n=2 Tax=Bifidobacterium RepID=R5GPP4_9BIFI
carbamoyl phosphate synthase small subunit
L3_082_090G1_scaffold_143_5
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2790..6170
DNA (3381bp) protein (1127aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
Carbamoyl-phosphate synthase large chain n=2 Tax=Bifidobacterium RepID=A7A4T6_BIFAD
carbamoyl-phosphate synthase large chain
L3_082_090G1_scaffold_143_6
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6170..7111
DNA (942bp) protein (314aa)
Orotidine 5'-phosphate decarboxylase n=2 Tax=Bifidobacterium adolescentis RepID=A7A4T7_BIFAD
orotidine 5'-phosphate decarboxylase-like protein
Orotidine 5'-phosphate decarboxylase {ECO:0000313|EMBL:KIM01067.1}; Orotidine 5'-phosphate decarboxylase-like protein {ECO:0000313|EMBL:AJE05553.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_082_090G1_scaffold_143_7
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7172..7759
DNA (588bp) protein (196aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
Guanylate kinase n=2 Tax=Bifidobacterium RepID=A7A4T8_BIFAD
guanylate kinase
L3_082_090G1_scaffold_143_8
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7847..9700)
DNA (1854bp) protein (618aa)
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
Dihydroxy-acid dehydratase n=2 Tax=Bifidobacterium adolescentis RepID=ILVD_BIFAA
L3_082_090G1_scaffold_143_9
Bifidobacterium adolescentis CAG:119, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9921..10205
DNA (285bp) protein (95aa)
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1263057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium adolescentis CAG:119.;"
DNA-directed RNA polymerase subunit omega n=4 Tax=root RepID=RPOZ_BIFAA
L3_082_090G1_scaffold_143_10
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10379..11593
DNA (1215bp) protein (405aa)
metK; S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase {ECO:0000255|HAMAP-Rule:MF_00086}; Short=AdoMet synthase {ECO:0000255|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000255|HAMAP-Rule:MF_00086};; MAT {ECO:0000255|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000255|HAMAP-Rule:MF_00086}; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
S-adenosylmethionine synthase n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=METK_BIFAA
L3_082_090G1_scaffold_143_11
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11634..13883
DNA (2250bp) protein (750aa)
Probable primosomal protein N n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5H3L0_9BIFI
Primosome assembly protein PriA {ECO:0000313|EMBL:KFI96722.1}; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
primosome assembly protein PriA
L3_082_090G1_scaffold_143_12
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13920..14660
DNA (741bp) protein (247aa)
HAD hydrolase family IA variant 3 n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5H3K2_9BIFI
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EDN83926.1}; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
putative alpha beta hydrolase
L3_082_090G1_scaffold_143_13
Bifidobacterium adolescentis CAG:119, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14765..15727
DNA (963bp) protein (321aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1263057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium adolescentis CAG:119.;"
Methionyl-tRNA formyltransferase n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5H3J6_9BIFI
methionyl-tRNA formyltransferase
L3_082_090G1_scaffold_143_14
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15879..16562)
DNA (684bp) protein (228aa)
Phosphoserine phosphatase SerB n=2 Tax=Bifidobacterium RepID=A7A4U5_BIFAD
putative phosphoserine phosphatase
Phosphoserine phosphatase {ECO:0000313|EMBL:AII75982.1}; Putative phosphoserine phosphatase {ECO:0000313|EMBL:AJE05562.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_082_090G1_scaffold_143_15
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16615..18183
DNA (1569bp) protein (523aa)
AAA ATPase forming ring-shaped complexes n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5H329_9BIFI
putative Aaa-family ATPase
AAA ATPase forming ring-shaped complexes {ECO:0000256|SAAS:SAAS00017598}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_082_090G1_scaffold_143_16
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18255..19838
DNA (1584bp) protein (528aa)
Proteasome accessory factor PafA2 n=2 Tax=Bifidobacterium RepID=A7A4U7_BIFAD
proteasome-associated protein
Proteasome-associated protein {ECO:0000313|EMBL:AII75984.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_082_090G1_scaffold_143_17
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19973..20803
DNA (831bp) protein (277aa)
Inositol monophosphatase family protein n=2 Tax=Bifidobacterium RepID=A7A4U8_BIFAD
putative inositol monophosphatase
Inositol monophosphatase family protein {ECO:0000313|EMBL:EDN83931.1}; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
L3_082_090G1_scaffold_143_18
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20898..21089
DNA (192bp) protein (64aa)
Prokaryotic ubiquitin-like protein Pup n=3 Tax=Bifidobacterium RepID=PUP_BIFAA
Prokaryotic ubiquitin-like protein Pup
Prokaryotic ubiquitin-like protein Pup {ECO:0000313|EMBL:AII75986.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_082_090G1_scaffold_143_19
Bifidobacterium adolescentis CAG:119, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21089..22555
DNA (1467bp) protein (489aa)
Pup--protein ligase {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320}; EC=6.3.2.n2 {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320};; Proteasome accessory factor A {ECO:0000256|HAMAP-Rule:MF_02111}; Pup-conjugating enzyme {ECO:0000256|HAMAP-Rule:MF_02111}; TaxID=1263057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium adolescentis CAG:119.;"
Pup--protein ligase n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5GQ27_9BIFI
proteasome-associated protein
L3_082_090G1_scaffold_143_20
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22629..23429)
DNA (801bp) protein (267aa)
Uncharacterized protein n=2 Tax=Bifidobacterium adolescentis RepID=A1A0U8_BIFAA
putative 2-keto-3-deoxy-6-phosphogluconate aldolase
2-keto-3-deoxy-6-phosphogluconate aldolase {ECO:0000313|EMBL:KFI96731.1}; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
L3_082_090G1_scaffold_143_21
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23426..23785)
DNA (360bp) protein (120aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=A7A4V2_BIFAD
hypothetical protein
MarR family transcriptional regulator {ECO:0000313|EMBL:KIM01948.1}; Uncharacterized protein {ECO:0000313|EMBL:AII75989.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_082_090G1_scaffold_143_22
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23929..24210)
DNA (282bp) protein (94aa)
DNA-binding protein HB1 n=10 Tax=Bifidobacterium RepID=A1A0V0_BIFAA
DNA-binding protein HU
Bifidobacterium kashiwanohense JCM 15439 = DSM 21854 DNA, complete genome {ECO:0000313|EMBL:BAQ28753.1}; DNA-binding protein HB1 {ECO:0000313|EMBL:KFI66782.1}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
L3_082_090G1_scaffold_143_23
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24365..26800)
DNA (2436bp) protein (812aa)
Narrowly conserved hypothetical membrane protein n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A0V1_BIFAA
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:AJE05571.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
L3_082_090G1_scaffold_143_24
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26948..28402)
DNA (1455bp) protein (485aa)
Adenylosuccinate lyase {ECO:0000313|EMBL:KFI96735.1}; EC=4.3.2.2 {ECO:0000313|EMBL:KFI96735.1};; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
Lyase n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A4V5_BIFAD
adenylosuccinate lyase
L3_082_090G1_scaffold_143_25
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28430..29602)
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A4V6_BIFAD
Uncharacterized protein {ECO:0000313|EMBL:EDN83939.1}; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
hypothetical protein
L3_082_090G1_scaffold_143_26
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30462..31034)
DNA (573bp) protein (191aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=A7A4V9_BIFAD
Cell surface protein {ECO:0000313|EMBL:KIM01943.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
cell surface elastin binding protein EbpS
L3_082_090G1_scaffold_143_27
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31031..32050)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=A1A0V6_BIFAA
hypothetical protein
von Willebrand factor A {ECO:0000313|EMBL:KFI96738.1}; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
L3_082_090G1_scaffold_143_28
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32047..33114)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=A7A4W1_BIFAD
Uncharacterized protein {ECO:0000313|EMBL:EDN83944.1}; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
hypothetical protein
L3_082_090G1_scaffold_143_29
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33115..33639)
DNA (525bp) protein (175aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=A1A0V8_BIFAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDN83945.1}; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
L3_082_090G1_scaffold_143_30
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33636..34589)
DNA (954bp) protein (318aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=A7A4W3_BIFAD
Uncharacterized protein {ECO:0000313|EMBL:KFI96741.1}; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
hypothetical protein
Displaying items 1-30 of 67 in total

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