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L3_082_090G1_scaffold_190

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_190_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

162..1394
DNA (1233bp) protein (411aa)
Integrase core domain protein n=2 Tax=Bifidobacterium RepID=C5EDH4_BIFLI
Uncharacterized protein {ECO:0000313|EMBL:BAP84397.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
IS21 family transposase
L3_082_090G1_scaffold_190_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1391..2161
DNA (771bp) protein (257aa)
IstB domain protein ATP-binding protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZWP2_BIFLJ
IstB domain protein ATP-binding protein {ECO:0000313|EMBL:BAP84396.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
IstB domain-containing protein ATP-binding protein
L3_082_090G1_scaffold_190_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2231..2473)
DNA (243bp) protein (81aa)
Transposase and inactivated derivatives IS30 family n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MUJ3_9BIFI
Transposase and inactivated derivatives IS30 family {ECO:0000313|EMBL:BAP84395.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
hypothetical protein
L3_082_090G1_scaffold_190_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2850..3614)
DNA (765bp) protein (255aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=C5EDH1_BIFLI
Uncharacterized protein {ECO:0000313|EMBL:BAP84394.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
hypothetical protein
L3_082_090G1_scaffold_190_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3607..5094)
DNA (1488bp) protein (496aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G4Y1_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN25044.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_082_090G1_scaffold_190_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5248..6495)
DNA (1248bp) protein (416aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G4Y0_BIFLO
rmlB2; dTDP-glucose 4,6-dehydratase
L3_082_090G1_scaffold_190_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6649..7827
DNA (1179bp) protein (393aa)
UDP-galactopyranose mutase {ECO:0000313|EMBL:EEI80394.1}; EC=5.4.99.9 {ECO:0000313|EMBL:EEI80394.1};; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
UDP-galactopyranose mutase n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GWJ9_BIFLN
glf; glf
L3_082_090G1_scaffold_190_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8048..9259
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum E18 RepID=V6Y3A4_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:ESV34394.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
hypothetical protein
L3_082_090G1_scaffold_190_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9362..10183
DNA (822bp) protein (274aa)
Possible 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase in the fumarylacetoacetate hydrolase family n=11 Tax=Bifidobacterium RepID=Q8G4X7_BIFLO
mhpD; mhpd
FAH family protein {ECO:0000313|EMBL:EIJ23400.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_082_090G1_scaffold_190_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10256..10432)
DNA (177bp) protein (59aa)
Uncharacterized protein n=14 Tax=Bifidobacterium RepID=B3DPG8_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIJ29339.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_082_090G1_scaffold_190_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10429..11304)
DNA (876bp) protein (292aa)
Regulatory protein, IclR n=9 Tax=Bifidobacterium RepID=D6ZWN2_BIFLJ
transcriptional regulator
Transcriptional regulator, IclR family, C-terminal domain protein {ECO:0000313|EMBL:EIJ29314.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_082_090G1_scaffold_190_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11550..13103
DNA (1554bp) protein (518aa)
Histidine ammonia-lyase {ECO:0000256|RuleBase:RU004479, ECO:0000256|SAAS:SAAS00083026}; EC=4.3.1.3 {ECO:0000256|RuleBase:RU004479, ECO:0000256|SAAS:SAAS00083026};; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
Histidine ammonia-lyase n=10 Tax=Bifidobacterium longum RepID=D6DCG5_BIFLN
histidine ammonia-lyase
L3_082_090G1_scaffold_190_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13322..15991
DNA (2670bp) protein (890aa)
Chaperone protein ClpB n=12 Tax=Bifidobacterium longum RepID=CLPB_BIFLO
Clp protease
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
L3_082_090G1_scaffold_190_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16138..17247
DNA (1110bp) protein (370aa)
GltX2 n=9 Tax=Bacteria RepID=E4R2H8_BIFLM
gltX2; gltx2
Putative glutamyl-queuosine tRNA(Asp) synthetase {ECO:0000313|EMBL:EIJ23374.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_082_090G1_scaffold_190_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17273..18382
DNA (1110bp) protein (370aa)
Putative glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:ESV34400.1}; EC=3.1.4.46 {ECO:0000313|EMBL:ESV34400.1};; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
Glycerophosphoryl diester phosphodiesterase n=3 Tax=Bifidobacterium longum RepID=B3DPH3_BIFLD
Glycerophosphoryl diester phosphodiesterase
L3_082_090G1_scaffold_190_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18578..19057)
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Ribosomal RNA large subunit methyltransferase H n=19 Tax=Bifidobacterium RepID=RLMH_BIFLD
hypothetical protein
L3_082_090G1_scaffold_190_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19105..19746)
DNA (642bp) protein (214aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
Uracil phosphoribosyltransferase n=7 Tax=Bifidobacterium RepID=UPP_BIFLD
upp; uracil phosphoribosyltransferase
L3_082_090G1_scaffold_190_18
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20050..21360
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MUH6_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CCY95435.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Predicted ATPase (AAA+ superfamily)
L3_082_090G1_scaffold_190_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21620..22294)
DNA (675bp) protein (225aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum RepID=C2GWL1_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:EEQ56048.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
hypothetical protein
L3_082_090G1_scaffold_190_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22431..23630)
DNA (1200bp) protein (400aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8ARM9_BIFLN
hypothetical protein
NTP pyrophosphohydrolase {ECO:0000313|EMBL:KEY20650.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_082_090G1_scaffold_190_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23788..26025)
DNA (2238bp) protein (746aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
Polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase n=11 Tax=Bifidobacterium RepID=D6DCF6_BIFLN
L3_082_090G1_scaffold_190_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26530..27795
DNA (1266bp) protein (422aa)
Metallophosphoesterase n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NDA5_9BIFI
Serine/threonine protein phosphatase {ECO:0000313|EMBL:KEY20648.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
calcineurin-like phosphoesterase
L3_082_090G1_scaffold_190_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27944..28744)
DNA (801bp) protein (267aa)
Transcriptional regulator, IclR family n=6 Tax=Bifidobacterium RepID=D6DCF4_BIFLN
transcriptional regulator
IclR helix-turn-helix domain protein {ECO:0000313|EMBL:CCK35776.1}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
L3_082_090G1_scaffold_190_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29038..30441
DNA (1404bp) protein (468aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
3-isopropylmalate dehydratase large subunit n=14 Tax=Bifidobacterium RepID=LEUC_BIFLD
isopropylmalate isomerase large subunit
L3_082_090G1_scaffold_190_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30524..31216
DNA (693bp) protein (231aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031, ECO:0000313|EMBL:CBK70173.1};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
3-isopropylmalate dehydratase small subunit n=16 Tax=Bifidobacterium RepID=LEUD_BIFLD
isopropylmalate isomerase small subunit
L3_082_090G1_scaffold_190_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31733..32860
DNA (1128bp) protein (376aa)
Dihydroorotate oxidase n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EDE5_BIFLI
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:AIW44350.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_082_090G1_scaffold_190_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33070..34416)
DNA (1347bp) protein (449aa)
NADH oxidase {ECO:0000313|EMBL:EEQ56038.1}; EC=1.6.99.3 {ECO:0000313|EMBL:EEQ56038.1};; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
Uncharacterized NAD(FAD)-dependent dehydrogenases n=15 Tax=Bifidobacterium RepID=D6DCE8_BIFLN
hcaD; hcad
L3_082_090G1_scaffold_190_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34666..35991
DNA (1326bp) protein (442aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|SAAS:SAAS00085344};; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
UDP-N-acetylglucosamine enolpyruvyl transferase n=14 Tax=Bifidobacterium RepID=B3DPI6_BIFLD
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
L3_082_090G1_scaffold_190_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36040..37293)
DNA (1254bp) protein (418aa)
Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities n=8 Tax=Bifidobacterium RepID=D6DCE7_BIFLN
aminotransferase
Probable aminotransferase {ECO:0000313|EMBL:AAN25069.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_082_090G1_scaffold_190_30
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37387..38319)
DNA (933bp) protein (311aa)
Transcriptional regulator n=10 Tax=Bifidobacterium RepID=D6DCE6_BIFLN
transcriptional regulator
Probable LysR-type transcriptional regulator {ECO:0000313|EMBL:CCY95423.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Displaying items 1-30 of 55 in total

View Taxonomy