ggKbase home page

L3_082_090G1_scaffold_234

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_234_1
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..109
-----------------
DNA (108bp)
protein (36aa)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GPZ1_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93251.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L3_082_090G1_scaffold_234_2
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

276..1190
-----------------
DNA (915bp)
protein (305aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P876_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS12122.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_082_090G1_scaffold_234_3
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1153..1605
-----------------
DNA (453bp)
protein (151aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P875_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS12121.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_082_090G1_scaffold_234_4
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1636..1965)
-----------------
DNA (330bp)
protein (110aa)
DNA-binding helix-turn-helix protein n=2 Tax=Clostridiales RepID=B0P874_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGA93254.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
XRE family transcriptional regulator
L3_082_090G1_scaffold_234_5
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2254..2640
-----------------
DNA (387bp)
protein (129aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0P873_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGA93255.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L3_082_090G1_scaffold_234_6
unknown

Not on your lists

comp(2988..3176)
-----------------
DNA (189bp)
protein (63aa)

This feature has no annotations

L3_082_090G1_scaffold_234_7
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3427..3834
-----------------
DNA (408bp)
protein (136aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P870_9FIRM
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EDS12116.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L3_082_090G1_scaffold_234_8
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3831..4013
-----------------
DNA (183bp)
protein (61aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P869_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS12115.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_082_090G1_scaffold_234_9
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4067..4492)
-----------------
DNA (426bp)
protein (142aa)
Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P868_9FIRM
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:EDS12114.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_082_090G1_scaffold_234_10
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4663..5355)
-----------------
DNA (693bp)
protein (231aa)
ribC: riboflavin biosynthesis protein RibC (EC:2.7.1.26 2.7.7.2)
Uncharacterized protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6THH5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC72888.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L3_082_090G1_scaffold_234_11
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5364..6008)
-----------------
DNA (645bp)
protein (215aa)
Uncharacterized protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TKV0_9FIRM
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
hypothetical protein
L3_082_090G1_scaffold_234_12
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6340..6861)
-----------------
DNA (522bp)
protein (174aa)
Nitroreductase n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LWQ8_9FIRM
Nitroreductase
Nitroreductase {ECO:0000313|EMBL:CBL22061.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
L3_082_090G1_scaffold_234_13
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7011..7364
-----------------
DNA (354bp)
protein (118aa)
Predicted transcriptional regulators n=2 Tax=Clostridiales RepID=D4LWQ9_9FIRM
Predicted transcriptional regulators
Predicted transcriptional regulators {ECO:0000313|EMBL:CBL22062.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
L3_082_090G1_scaffold_234_14
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7508..7930)
-----------------
DNA (423bp)
protein (141aa)
Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P857_9FIRM
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:EDS12103.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_082_090G1_scaffold_234_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8118..10610)
-----------------
DNA (2493bp)
protein (831aa)
Efflux ABC transporter, permease protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FKM2_9CLOT
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EEA83417.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ABC-type transport system, permease
L3_082_090G1_scaffold_234_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10607..11281)
-----------------
DNA (675bp)
protein (225aa)
ABC-type transport system, ATP-binding protein (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FKM1_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEA83416.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_082_090G1_scaffold_234_17
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11350..12432)
-----------------
DNA (1083bp)
protein (361aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=3 Tax=root RepID=A5Z6V7_9FIRM
two-component sensor histidine kinase
L3_082_090G1_scaffold_234_18

Not on your lists

comp(12438..13115)
-----------------
DNA (678bp)
protein (226aa)
Response regulator receiver domain protein n=3 Tax=root RepID=A5Z6V6_9FIRM
Two-component response regulator {ECO:0000313|EMBL:EKC68636.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
two-component response regulator
L3_082_090G1_scaffold_234_19
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13381..14037)
-----------------
DNA (657bp)
protein (219aa)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GQ04_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93264.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L3_082_090G1_scaffold_234_20
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14064..14771)
-----------------
DNA (708bp)
protein (236aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P844_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS12090.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L3_082_090G1_scaffold_234_21
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14900..15223)
-----------------
DNA (324bp)
protein (108aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P843_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS12089.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L3_082_090G1_scaffold_234_22
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15220..16314)
-----------------
DNA (1095bp)
protein (365aa)
Uncharacterized protein n=2 Tax=root RepID=D4C6Z0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE14328.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_082_090G1_scaffold_234_23
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16363..16962)
-----------------
DNA (600bp)
protein (200aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P841_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS12087.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L3_082_090G1_scaffold_234_24
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17064..18293)
-----------------
DNA (1230bp)
protein (410aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0P840_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS12085.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
Predicted ATPase (AAA+ superfamily)
L3_082_090G1_scaffold_234_25
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18412..18903)
-----------------
DNA (492bp)
protein (164aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P838_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS12084.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L3_082_090G1_scaffold_234_26
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18900..19439)
-----------------
DNA (540bp)
protein (180aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P837_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS12083.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L3_082_090G1_scaffold_234_27
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19615..20100)
-----------------
DNA (486bp)
protein (162aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P836_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS12082.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L3_082_090G1_scaffold_234_28
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20093..20521)
-----------------
DNA (429bp)
protein (143aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P835_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS12081.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L3_082_090G1_scaffold_234_29
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20557..21240)
-----------------
DNA (684bp)
protein (228aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P834_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS12080.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
putative Fe-S oxidoreductase
L3_082_090G1_scaffold_234_30
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21345..21590)
-----------------
DNA (246bp)
protein (82aa)
Uncharacterized protein n=3 Tax=root RepID=B0P833_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFE14336.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Displaying items 1-30 of 70 in total

View Taxonomy