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L3_082_090G1_scaffold_249

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Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_249_1
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(1..198)
DNA (198bp) protein (66aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z5X4_9ACTN
L3_082_090G1_scaffold_249_2
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(205..3696)
DNA (3492bp) protein (1164aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Collinsella sp. CAG:166 RepID=R6A1S7_9ACTN
L3_082_090G1_scaffold_249_3
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3984..4892)
DNA (909bp) protein (303aa)
Nucleotidyl transferase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZLJ2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74754.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
nucleotidyl transferase
L3_082_090G1_scaffold_249_4
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5205..5582)
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=2 Tax=Collinsella RepID=A4E9G7_9ACTN
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
50S ribosomal protein L12
L3_082_090G1_scaffold_249_5
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(5685..6206)
DNA (522bp) protein (174aa)
50S ribosomal protein L10 n=2 Tax=Collinsella RepID=A4E9G6_9ACTN
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
50S ribosomal protein L10P
L3_082_090G1_scaffold_249_6
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6710..7846)
DNA (1137bp) protein (379aa)
Putative aminotransferase A n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z5X0_9ACTN
Putative aminotransferase A {ECO:0000313|EMBL:CDA35123.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
aspartate/tyrosine/aromatic aminotransferase
L3_082_090G1_scaffold_249_7
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

7940..8596
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A1S3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74758.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
L3_082_090G1_scaffold_249_8
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8593..9162)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZLI9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35121.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
G:T/U mismatch-specific DNA glycosylase
L3_082_090G1_scaffold_249_9
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9166..10542)
DNA (1377bp) protein (459aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Alpha amylase catalytic domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z8B9_9ACTN
Glycosidases
L3_082_090G1_scaffold_249_10
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10696..11892)
DNA (1197bp) protein (399aa)
Transporter major facilitator family protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZIE6_9ACTN
Transporter major facilitator family protein {ECO:0000313|EMBL:CDA36389.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Arabinose efflux permease
L3_082_090G1_scaffold_249_11
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12014..14461)
DNA (2448bp) protein (816aa)
Ferrous iron transport protein B n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZBY5_9ACTN
Ferrous iron transporter B {ECO:0000313|EMBL:KGI74762.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
ferrous iron transport protein B
L3_082_090G1_scaffold_249_12
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(14847..15746)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9F9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74763.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
putative esterase
L3_082_090G1_scaffold_249_13
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

15990..16553
DNA (564bp) protein (188aa)
PTS system glucose subfamily IIA component n=1 Tax=Collinsella sp. CAG:166 RepID=R6A5J4_9ACTN
PTS system glucose subfamily IIA component {ECO:0000313|EMBL:CDA36392.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
PTS system glucose subfamily transporter subunit IIA
L3_082_090G1_scaffold_249_14
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

16723..18138
DNA (1416bp) protein (472aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9F7_9ACTN
L3_082_090G1_scaffold_249_15
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

18398..19183
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZIF2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA36394.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
L3_082_090G1_scaffold_249_16
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

19344..20324
DNA (981bp) protein (327aa)
ABC transporter substrate binding protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZBZ1_9ACTN
ABC transporter substrate binding protein {ECO:0000313|EMBL:CDA36395.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L3_082_090G1_scaffold_249_17
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

20528..21451
DNA (924bp) protein (308aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9F4_9ACTN
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EBA39899.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
inner-membrane translocator
L3_082_090G1_scaffold_249_18
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

21444..22238
DNA (795bp) protein (265aa)
ABC transporter ATP-binding protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A5J8_9ACTN
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDA36397.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
ABC transporter
L3_082_090G1_scaffold_249_19
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

22397..24145
DNA (1749bp) protein (583aa)
5'-nucleotidase, C-terminal domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9F2_9ACTN
5'-nucleotidase, C-terminal domain protein {ECO:0000313|EMBL:EBA39897.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
L3_082_090G1_scaffold_249_20
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

24181..24420
DNA (240bp) protein (80aa)
5'-nucleotidase C-terminal domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z9L5_9ACTN
5'-nucleotidase C-terminal domain protein {ECO:0000313|EMBL:CDA36398.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
L3_082_090G1_scaffold_249_21
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

24550..25317
DNA (768bp) protein (256aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9F1_9ACTN
Transporter, small conductance mechanosensitive ion channel MscS family protein {ECO:0000313|EMBL:EBA39896.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
small-conductance mechanosensitive channel
L3_082_090G1_scaffold_249_22
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

25411..27327
DNA (1917bp) protein (639aa)
Basic membrane protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9F0_9ACTN
Basic membrane protein {ECO:0000313|EMBL:EBA39895.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
basic membrane lipoprotein
L3_082_090G1_scaffold_249_23
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

27324..28034
DNA (711bp) protein (237aa)
Ser/Thr phosphatase family protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9E9_9ACTN
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EBA39894.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Predicted phosphoesterases, related to the Icc protein
L3_082_090G1_scaffold_249_24
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(28322..29029)
DNA (708bp) protein (236aa)
50S ribosomal protein L1 n=2 Tax=Collinsella RepID=A4E9E8_9ACTN
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
50S ribosomal protein L1
L3_082_090G1_scaffold_249_25
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(29147..29575)
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=2 Tax=Collinsella RepID=A4E9E7_9ACTN
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
50S ribosomal protein L11
L3_082_090G1_scaffold_249_26
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(29696..30232)
DNA (537bp) protein (179aa)
Transcription termination/antitermination protein NusG n=2 Tax=Collinsella RepID=A4E9E6_9ACTN
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
transcription antitermination protein nusG
L3_082_090G1_scaffold_249_27
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(30236..30574)
DNA (339bp) protein (113aa)
Protein translocase subunit SecE n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZC02_9ACTN
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Preprotein translocase subunit SecE
L3_082_090G1_scaffold_249_28
Coriobacterium glomerans, Coriobacterium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(30740..30907)
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=1 Tax=Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2) RepID=F2NAL9_CORGP
50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=700015 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Coriobacterium.;" source="Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 /; PW2).;"
L3_082_090G1_scaffold_249_29
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(31169..32359)
DNA (1191bp) protein (397aa)
Elongation factor Tu n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9E2_9ACTN
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
translation elongation factor 1A (EF-1A/EF-Tu)
L3_082_090G1_scaffold_249_30
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

33815..35155
DNA (1341bp) protein (447aa)
DNA binding domain protein, excisionase family n=1 Tax=Eggerthella sp. HGA1 RepID=F0HQP2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74640.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
excisionase family DNA binding domain-containing protein
Displaying items 1-30 of 45 in total

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