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L3_082_090G1_scaffold_296

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_296_1
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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2..394
DNA (393bp) protein (131aa)
Uncharacterized protein n=2 Tax=Megasphaera RepID=R7MWD1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDF05499.1}; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
L3_082_090G1_scaffold_296_2
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

391..2160
DNA (1770bp) protein (590aa)
CRISPR-associated protein n=1 Tax=Megasphaera elsdenii CAG:570 RepID=R7N084_9FIRM
CRISPR-associated protein {ECO:0000313|EMBL:CDF05498.1}; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
CRISPR-associated protein
L3_082_090G1_scaffold_296_3
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

2161..3051
DNA (891bp) protein (297aa)
CRISPR-associated protein n=2 Tax=Megasphaera RepID=G0VLL2_MEGEL
CRISPR-associated protein
CRISPR-associated protein {ECO:0000313|EMBL:CDF05497.1}; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
L3_082_090G1_scaffold_296_4
unknown

Not on your lists

4400..4546
DNA (147bp) protein (49aa)

This feature has no annotations

L3_082_090G1_scaffold_296_5
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

5725..6390
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6X076_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD09701.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
hypothetical protein
L3_082_090G1_scaffold_296_6
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

6387..7418
DNA (1032bp) protein (344aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Megasphaera elsdenii DSM 20460 RepID=G0VQW7_MEGEL
CRISPR-associated protein CaS1
L3_082_090G1_scaffold_296_7
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

7431..7721
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Megasphaera elsdenii DSM 20460 RepID=G0VQW8_MEGEL
CRISPR-associated protein
L3_082_090G1_scaffold_296_8
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

7860..8672
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LFE7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFY04442.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
L3_082_090G1_scaffold_296_9
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

8835..12002
DNA (3168bp) protein (1056aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LFE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFY04441.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
ATP-dependent nuclease subunit B-like protein
L3_082_090G1_scaffold_296_10
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

11995..15384
DNA (3390bp) protein (1130aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
exodeoxyribonuclease V (EC:3.1.11.5)
Putative ATP-dependent nuclease subunit A n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6X9W6_9FIRM
L3_082_090G1_scaffold_296_11
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

15393..15596
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LFE4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFY04439.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
L3_082_090G1_scaffold_296_12
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

15680..16801
DNA (1122bp) protein (374aa)
Peptidase T-like protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LFE3_9FIRM
Peptidase T-like protein {ECO:0000313|EMBL:EFY04438.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
peptidase T-like protein
L3_082_090G1_scaffold_296_13
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

16983..18194
DNA (1212bp) protein (404aa)
ribD; riboflavin biosynthesis protein ribD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WUY4_9FIRM
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
L3_082_090G1_scaffold_296_14
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

18194..18844
DNA (651bp) protein (217aa)
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:EFY05279.1}; EC=2.5.1.9 {ECO:0000313|EMBL:EFY05279.1};; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
riboflavin synthase subunit alpha (EC:2.5.1.9)
Riboflavin synthase, alpha subunit n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LD39_9FIRM
L3_082_090G1_scaffold_296_15
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

18867..20096
DNA (1230bp) protein (410aa)
Riboflavin biosynthesis protein RibBA n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6Y3Z6_9FIRM
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase
L3_082_090G1_scaffold_296_16
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

20590..21051
DNA (462bp) protein (154aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.-)
6,7-dimethyl-8-ribityllumazine synthase n=2 Tax=Phascolarctobacterium succinatutens RepID=E8LD37_9FIRM
L3_082_090G1_scaffold_296_17
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

21228..22127
DNA (900bp) protein (300aa)
33 kDa chaperonin n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LD36_9FIRM
33 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00117, ECO:0000256|SAAS:SAAS00038673}; Heat shock protein 33 homolog {ECO:0000256|HAMAP-Rule:MF_00117}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
hypothetical protein
L3_082_090G1_scaffold_296_18
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


22248..23270
DNA (1023bp) protein (341aa)
Protein RecA n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LD35_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
recA protein
L3_082_090G1_scaffold_296_19
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

23245..23772
DNA (528bp) protein (176aa)
Regulatory protein RecX n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6X3V1_9FIRM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
regulatory protein RecX
L3_082_090G1_scaffold_296_20
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

24011..25555
DNA (1545bp) protein (515aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
metal dependent phosphohydrolase (EC:3.1.4.16)
Ribonuclease Y n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6XXE0_9FIRM
L3_082_090G1_scaffold_296_21
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

25967..26545
DNA (579bp) protein (193aa)
Bifunctional adenosylcobalamin biosynthesis protein CobU {ECO:0000313|EMBL:EFY05272.1}; EC=2.7.1.156 {ECO:0000313|EMBL:EFY05272.1};; EC=2.7.7.62 {ECO:0000313|EMBL:EFY05272.1};; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
Adenosylcobinamide-phosphate guanylyltransferase (EC:2.7.7.62)
Bifunctional adenosylcobalamin biosynthesis protein CobU n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LD32_9FIRM
L3_082_090G1_scaffold_296_22
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

26554..27564
DNA (1011bp) protein (337aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|SAAS:SAAS00013344}; EC=2.4.2.21 {ECO:0000256|SAAS:SAAS00013328};; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
cobT; Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LD31_9FIRM
L3_082_090G1_scaffold_296_23
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

27569..28303
DNA (735bp) protein (245aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
Cobalamin synthase n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WNE4_9FIRM
Cobalamin synthase
L3_082_090G1_scaffold_296_24
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

28360..29160
DNA (801bp) protein (267aa)
nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
Putative nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LD29_9FIRM
Putative nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000313|EMBL:EFY05269.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
L3_082_090G1_scaffold_296_25
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

29160..29801
DNA (642bp) protein (214aa)
phosphoglycerate mutase (EC:5.4.2.1)
Phosphoglycerate mutase family protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LD28_9FIRM
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EFY05268.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
L3_082_090G1_scaffold_296_26
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

30185..30469
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WII9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD10938.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
hypothetical protein
L3_082_090G1_scaffold_296_27
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

30619..31869
DNA (1251bp) protein (417aa)
ATP-dependent DNA helicase, RecQ family {ECO:0000313|EMBL:EFY05265.1}; EC=3.6.1.- {ECO:0000313|EMBL:EFY05265.1};; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
recQ; ATP-dependent DNA helicase RecQ (EC:3.6.4.12)
ATP-dependent DNA helicase, RecQ family n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LD25_9FIRM
L3_082_090G1_scaffold_296_28
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(31873..32544)
DNA (672bp) protein (224aa)
UPF0173 metal-dependent hydrolase BN587_00186 n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WNE8_9FIRM
UPF0173 metal-dependent hydrolase BN587_00186 {ECO:0000256|HAMAP-Rule:MF_00457}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
beta-lactamase
L3_082_090G1_scaffold_296_29
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

32740..33684
DNA (945bp) protein (315aa)
Tapetum specific protein TAP35/TAP44 n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LD23_9FIRM
Tapetum specific protein TAP35/TAP44 {ECO:0000313|EMBL:EFY05263.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
hypothetical protein
L3_082_090G1_scaffold_296_30
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

33728..34207
DNA (480bp) protein (160aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LD22_9FIRM
tRNA/rRNA methyltransferase SpoU
Displaying items 1-30 of 48 in total

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