ggKbase home page

L3_082_090G1_scaffold_367

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_367_1
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(151..1203)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2B1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49167.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
PPIC-type PPIASE domain.
L3_082_090G1_scaffold_367_2
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1229..4594)
DNA (3366bp) protein (1122aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
transcription-repair coupling factor (EC:3.6.1.-)
Transcription-repair-coupling factor n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQ34_9FIRM
L3_082_090G1_scaffold_367_3
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4596..5174)
DNA (579bp) protein (193aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=4 Tax=Clostridiales RepID=A7B2A9_RUMGN
L3_082_090G1_scaffold_367_4
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5320..5808
DNA (489bp) protein (163aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2A7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49170.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_082_090G1_scaffold_367_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5787..6050)
DNA (264bp) protein (88aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2A6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77877.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_082_090G1_scaffold_367_6
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6057..6737)
DNA (681bp) protein (227aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
HAD-superfamily hydrolase subfamily IA family protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TWU2_9FIRM
HAD-superfamily hydrolase subfamily IA family protein {ECO:0000313|EMBL:CCZ67794.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_082_090G1_scaffold_367_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6837..7616)
DNA (780bp) protein (260aa)
RNA polymerase sigma factor n=2 Tax=Clostridiales RepID=A7B2A4_RUMGN
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
RNA polymerase, sigma subunit, RpsG/SigG
L3_082_090G1_scaffold_367_8
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7749..7886)
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U9D8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67796.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_082_090G1_scaffold_367_9
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8006..9616)
DNA (1611bp) protein (537aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67798.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted exonuclease of the beta-lactamase fold involved in RNA processing
L3_082_090G1_scaffold_367_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9693..10433)
DNA (741bp) protein (247aa)
RNA polymerase sigma factor n=4 Tax=Clostridiales RepID=A7B2A0_RUMGN
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
RNA polymerase, sigma 29 subunit, SigE
L3_082_090G1_scaffold_367_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10399..11220)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQ42_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67800.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Sporulation factor SpoIIGA.
L3_082_090G1_scaffold_367_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11403..12578)
DNA (1176bp) protein (392aa)
Cell division protein FtsZ n=4 Tax=Clostridiales RepID=A7B297_RUMGN
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
cell division protein FtsZ
L3_082_090G1_scaffold_367_13
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12719..13582)
DNA (864bp) protein (288aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BPV3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49180.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_082_090G1_scaffold_367_14
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13609..14694)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5TPT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49181.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Bacterial cell division membrane protein
L3_082_090G1_scaffold_367_15
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14709..16067)
DNA (1359bp) protein (453aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TWV0_9FIRM
L3_082_090G1_scaffold_367_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16070..17026)
DNA (957bp) protein (319aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQ46_9FIRM
L3_082_090G1_scaffold_367_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17082..18797)
DNA (1716bp) protein (572aa)
Penicillin-binding protein, transpeptidase domain protein n=3 Tax=Lachnospiraceae RepID=A7B6P6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49184.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Cell division protein FtsI/penicillin-binding protein 2
L3_082_090G1_scaffold_367_18
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18859..20880)
DNA (2022bp) protein (674aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BPV8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49185.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Cell division protein FtsI/penicillin-binding protein 2
L3_082_090G1_scaffold_367_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20890..21432)
DNA (543bp) protein (181aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B6P4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49186.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_082_090G1_scaffold_367_20
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21519..22454)
DNA (936bp) protein (312aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=4 Tax=Clostridiales RepID=A7B6P3_RUMGN
L3_082_090G1_scaffold_367_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22484..22921)
DNA (438bp) protein (146aa)
Protein MraZ n=4 Tax=Clostridiales RepID=A7B6P2_RUMGN
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
mraZ protein
L3_082_090G1_scaffold_367_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23132..23368)
DNA (237bp) protein (79aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B6P1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49189.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_082_090G1_scaffold_367_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23448..24287)
DNA (840bp) protein (280aa)
EDD domain protein, DegV family n=4 Tax=Clostridiales RepID=A7B6P0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49190.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
EDD domain protein, DegV family
L3_082_090G1_scaffold_367_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24412..25647)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=V8BQT7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16861.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Bacterial cell division membrane protein
L3_082_090G1_scaffold_367_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25677..27557)
DNA (1881bp) protein (627aa)
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:EDN76429.1}; EC=6.3.5.4 {ECO:0000313|EMBL:EDN76429.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
asparagine synthase (glutamine-hydrolyzing) (EC:6.3.5.4)
Asparagine synthetase n=3 Tax=Lachnospiraceae RepID=A7B6N8_RUMGN
L3_082_090G1_scaffold_367_26
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27715..29232)
DNA (1518bp) protein (506aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B6N7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49193.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_082_090G1_scaffold_367_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29548..30171)
DNA (624bp) protein (208aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=V8BP17_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49194.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Mn-containing catalase
L3_082_090G1_scaffold_367_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30174..30443)
DNA (270bp) protein (90aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B6L2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49195.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_082_090G1_scaffold_367_29
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30440..30736)
DNA (297bp) protein (99aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TQ86_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67850.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_082_090G1_scaffold_367_30
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30873..32429
DNA (1557bp) protein (519aa)
ABC transporter ATP-binding protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U9J7_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCZ67851.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ATPase components of ABC transporters with duplicated ATPase domains
Displaying items 1-30 of 43 in total

View Taxonomy