ggKbase home page

L3_082_090G1_scaffold_449

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_449_1
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(107..5332)
DNA (5226bp) protein (1742aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JRM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN34755.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Cna protein B-type domain.
L3_082_090G1_scaffold_449_2
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5801..6421)
DNA (621bp) protein (207aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YIG2_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EPD57272.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
RNA polymerase sigma factor, sigma-70 family
L3_082_090G1_scaffold_449_3
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6867..7103)
DNA (237bp) protein (79aa)
Uncharacterized protein n=3 Tax=root RepID=S2XZ03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD57271.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
hypothetical protein
L3_082_090G1_scaffold_449_4
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7333..7749)
DNA (417bp) protein (139aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=S2Y4W5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD57270.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
hypothetical protein
L3_082_090G1_scaffold_449_5
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7761..9080)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YZN8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD57269.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
Nucleotidyltransferase/DNA polymerase involved in DNA repair
L3_082_090G1_scaffold_449_6
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9337..9747
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AN78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG90006.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
Helix-turn-helix.
L3_082_090G1_scaffold_449_7
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9841..10356
DNA (516bp) protein (172aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=S2YIG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD57267.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
Predicted Zn peptidase
L3_082_090G1_scaffold_449_8
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10416..10577)
DNA (162bp) protein (54aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=S2XYZ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG90008.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
hypothetical protein
L3_082_090G1_scaffold_449_9
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10710..11426
DNA (717bp) protein (239aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AN81_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG90009.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
L3_082_090G1_scaffold_449_10
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11498..12214)
DNA (717bp) protein (239aa)
XRE family transcriptional regulator n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B483B8
prophage LambdaBa04, DNA-binding protein
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEG92295.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L3_082_090G1_scaffold_449_11
Streptococcus parauberis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12361..13053
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Streptococcus parauberis NCFD 2020 RepID=F1YZF9_9STRE
Uncharacterized protein {ECO:0000313|EMBL:EGE54827.1}; TaxID=873447 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus parauberis NCFD 2020.;"
L3_082_090G1_scaffold_449_12
unknown

Not on your lists

13068..13229
DNA (162bp) protein (54aa)

This feature has no annotations

L3_082_090G1_scaffold_449_13
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13358..13654)
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_63FAA RepID=F3AEC2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG83622.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
hypothetical protein
L3_082_090G1_scaffold_449_14
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13665..14663)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BC97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG81865.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
Replication initiator protein A (RepA) N-terminus.
L3_082_090G1_scaffold_449_15
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14754..15659)
DNA (906bp) protein (302aa)
ParB-like partition protein n=3 Tax=Lachnospiraceae RepID=S2XYZ4_9FIRM
ParB-like partition protein {ECO:0000313|EMBL:EPD57261.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
ParB-like partition proteins
L3_082_090G1_scaffold_449_16
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15649..16434)
DNA (786bp) protein (262aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_63FAA RepID=F3AEC5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG83625.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
ATPases involved in chromosome partitioning
L3_082_090G1_scaffold_449_17
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16413..16670)
DNA (258bp) protein (86aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3ANC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG89808.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
Excisionase from transposon Tn916.
L3_082_090G1_scaffold_449_18
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16703..16939)
DNA (237bp) protein (79aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=E9RXE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC74102.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
hypothetical protein
L3_082_090G1_scaffold_449_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17179..19137)
DNA (1959bp) protein (653aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine-tRNA ligase n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BSA8_RUMGN
L3_082_090G1_scaffold_449_20
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19233..19718)
DNA (486bp) protein (162aa)
Transcription elongation factor GreA n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UFP7_9FIRM
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
transcription elongation factor GreA
L3_082_090G1_scaffold_449_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19862..20821)
DNA (960bp) protein (320aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
tRNA-dihydrouridine synthase n=3 Tax=Lachnospiraceae RepID=A7B5F3_RUMGN
tRNA-U20-dihydrouridine synthase
L3_082_090G1_scaffold_449_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20870..21211)
DNA (342bp) protein (114aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B5F2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN44907.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_082_090G1_scaffold_449_23
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21235..22215)
DNA (981bp) protein (327aa)
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPS9_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_082_090G1_scaffold_449_24
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22216..24309)
DNA (2094bp) protein (698aa)
Ornithine carbamoyltransferase {ECO:0000256|SAAS:SAAS00106174}; EC=2.1.3.3 {ECO:0000256|SAAS:SAAS00106174};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U919_9FIRM
L3_082_090G1_scaffold_449_25
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24341..25153)
DNA (813bp) protein (271aa)
Putative RNA methyltransferase TrmH family group 3 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UFQ3_9FIRM
Putative RNA methyltransferase TrmH family group 3 {ECO:0000313|EMBL:CCZ67662.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
rRNA methylase, putative, group 3
L3_082_090G1_scaffold_449_26
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25159..25812)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67663.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
K+ transport systems, NAD-binding component
L3_082_090G1_scaffold_449_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25828..27237)
DNA (1410bp) protein (470aa)
Potassium uptake protein, TrkH family n=3 Tax=Lachnospiraceae RepID=A7B5E7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17669.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Trk-type K+ transport systems, membrane components
L3_082_090G1_scaffold_449_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27247..27939)
DNA (693bp) protein (231aa)
Response regulator receiver domain protein n=4 Tax=Clostridiales RepID=A7B5E6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN44913.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_082_090G1_scaffold_449_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27932..28987)
DNA (1056bp) protein (352aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=4 Tax=Clostridiales RepID=A7B5E5_RUMGN
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./HAMP domain.
L3_082_090G1_scaffold_449_30
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29121..30308)
DNA (1188bp) protein (396aa)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase n=2 Tax=Lachnospiraceae RepID=A7B5E3_RUMGN
Displaying items 1-30 of 35 in total

View Taxonomy