ggKbase home page

L3_082_090G1_scaffold_492

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_492_1
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(117..857)
DNA (741bp) protein (247aa)
ABC transporter, ATP-binding protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EAA9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74930.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
ABC transporter
L3_082_090G1_scaffold_492_2
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(863..3085)
DNA (2223bp) protein (741aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EAA5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA39427.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
ABC transporter
L3_082_090G1_scaffold_492_3
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3152..3517)
DNA (366bp) protein (122aa)
Uncharacterized protein {ECO:0000313|EMBL:KGI74932.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
L3_082_090G1_scaffold_492_4
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

3638..4150
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EAA3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA39426.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
L3_082_090G1_scaffold_492_5
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

4160..4411
DNA (252bp) protein (84aa)
DNA-binding helix-turn-helix protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EAA1_9ACTN
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EBA39425.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_082_090G1_scaffold_492_6
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

4442..5137
DNA (696bp) protein (232aa)
Site-specific recombinase, phage integrase family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EAA0_9ACTN
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EBA39423.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Site-specific recombinase XerD
L3_082_090G1_scaffold_492_7
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

5534..5821
DNA (288bp) protein (96aa)
UPF0237 protein COLAER_01355 n=2 Tax=Collinsella RepID=A4EA99_9ACTN
UPF0237 protein BN511_01461 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
ACT domain-containing protein
L3_082_090G1_scaffold_492_8
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

5900..7318
DNA (1419bp) protein (473aa)
Citrate (Si)-synthase {ECO:0000313|EMBL:EBA39421.1}; EC=2.3.3.1 {ECO:0000313|EMBL:EBA39421.1};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
citrate (Si)-synthase (EC:2.3.3.1)
Citrate (Si)-synthase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EA98_9ACTN
L3_082_090G1_scaffold_492_9
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

7406..8248
DNA (843bp) protein (281aa)
Cof-like hydrolase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EA97_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74938.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
cof family hydrolase
L3_082_090G1_scaffold_492_10
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8441..9235)
DNA (795bp) protein (265aa)
Cof-like hydrolase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EA96_9ACTN
Cof-like hydrolase {ECO:0000313|EMBL:EBA39419.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
HAD-superfamily hydrolase
L3_082_090G1_scaffold_492_11
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9445..11265)
DNA (1821bp) protein (607aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067};; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Adenine deaminase (EC:3.5.4.2)
Adenine deaminase n=1 Tax=Collinsella sp. CAG:166 RepID=R6A529_9ACTN
L3_082_090G1_scaffold_492_12
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(11488..12699)
DNA (1212bp) protein (404aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EA94_9ACTN
L3_082_090G1_scaffold_492_13
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12796..14754)
DNA (1959bp) protein (653aa)
Peptidase, U32 family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EA92_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74942.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
peptidase U32
L3_082_090G1_scaffold_492_14
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

14917..17127
DNA (2211bp) protein (737aa)
penicillin-binding protein (EC:2.4.1.129)
Penicillin-binding protein, 1A family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EA91_9ACTN
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:EBA39414.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
L3_082_090G1_scaffold_492_15
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17312..17749)
DNA (438bp) protein (146aa)
Arginine repressor n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EA90_9ACTN
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
ArgR family transcriptional regulator
L3_082_090G1_scaffold_492_16
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17882..18922)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EA89_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74945.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
family 2 glycosyl transferase
L3_082_090G1_scaffold_492_17
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(19084..19908)
DNA (825bp) protein (275aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
tRNA pseudouridine synthase A n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZF92_9ACTN
tRNA pseudouridine synthase A
L3_082_090G1_scaffold_492_18
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(20002..20469)
DNA (468bp) protein (156aa)
50S ribosomal protein L17 n=2 Tax=Collinsella RepID=A4EA87_9ACTN
50S ribosomal protein L17 {ECO:0000256|RuleBase:RU000661}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
LSU ribosomal protein L17P
L3_082_090G1_scaffold_492_19
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20500..21441)
DNA (942bp) protein (314aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=2 Tax=Collinsella RepID=A4EA86_9ACTN
L3_082_090G1_scaffold_492_20
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(21474..22070)
DNA (597bp) protein (199aa)
30S ribosomal protein S4 n=2 Tax=Collinsella RepID=A4EA85_9ACTN
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
30S ribosomal protein S4P
L3_082_090G1_scaffold_492_21
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(22090..22494)
DNA (405bp) protein (135aa)
30S ribosomal protein S11 n=2 Tax=Collinsella RepID=A4EA84_9ACTN
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
30S ribosomal protein S11P
L3_082_090G1_scaffold_492_22
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(22509..22883)
DNA (375bp) protein (125aa)
30S ribosomal protein S13 n=2 Tax=Collinsella RepID=R5ZF94_9ACTN
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
30S ribosomal protein S13P
L3_082_090G1_scaffold_492_23
Eggerthella sp. CAG:209, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(22898..23011)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=18 Tax=Bacteria RepID=C7N7V4_SLAHD
LSU ribosomal protein L36P
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1262875 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:209.;"
L3_082_090G1_scaffold_492_24
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(23162..23386)
DNA (225bp) protein (75aa)
Translation initiation factor IF-1 n=2 Tax=Collinsella RepID=R5ZLX0_9ACTN
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
translation initiation factor 1 (bIF-1)
L3_082_090G1_scaffold_492_25
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(23485..24273)
DNA (789bp) protein (263aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=2 Tax=Collinsella RepID=A4EA80_9ACTN
L3_082_090G1_scaffold_492_26
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(24270..24896)
DNA (627bp) protein (209aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EA79_9ACTN
L3_082_090G1_scaffold_492_27
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(24915..26201)
DNA (1287bp) protein (429aa)
Protein translocase subunit SecY n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZF97_9ACTN
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
protein translocase subunit secY/sec61 alpha
L3_082_090G1_scaffold_492_28
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(26195..26644)
DNA (450bp) protein (150aa)
50S ribosomal protein L15 n=2 Tax=Collinsella RepID=A4EA77_9ACTN
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
50S ribosomal protein L15
L3_082_090G1_scaffold_492_29
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(26648..26830)
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=2 Tax=Collinsella RepID=A4EA76_9ACTN
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
50S ribosomal protein L30
L3_082_090G1_scaffold_492_30
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(26833..27357)
DNA (525bp) protein (175aa)
30S ribosomal protein S5 n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EA75_9ACTN
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
30S ribosomal protein S5P
Displaying items 1-30 of 36 in total

View Taxonomy