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L3_082_090G1_scaffold_494

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_494_1
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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2..631
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LDH0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFY05185.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
hypothetical protein
L3_082_090G1_scaffold_494_2
Anaerovibrio lipolyticus, Anaerovibrio, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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836..1474
DNA (639bp) protein (213aa)
serine recombinase n=2 Tax=Butyrivibrio fibrisolvens RepID=UPI0003B69D42
Resolvase {ECO:0000313|EMBL:KHM51397.1}; TaxID=82374 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Anaerovibrio.;" source="Anaerovibrio lipolyticus.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_082_090G1_scaffold_494_3
Coprococcus sp. CAG:782, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1512..1835)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. CAG:782 RepID=R5JIA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY54308.1}; TaxID=1262863 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:782.;"
L3_082_090G1_scaffold_494_4
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2018..3742
DNA (1725bp) protein (575aa)
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes (EC:1.8.4.8)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KW46_9FIRM
Phosphoadenosine phosphosulfate reductase {ECO:0000313|EMBL:KGJ51439.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
L3_082_090G1_scaffold_494_5
Megamonas funiformis, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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3753..4661
DNA (909bp) protein (303aa)
Putative uncharacterized protein n=1 Tax=Megamonas funiformis YIT 11815 RepID=H3K9B0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHR35431.1}; TaxID=742816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas funiformis YIT 11815.;"
hypothetical protein
L3_082_090G1_scaffold_494_6
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4661..8281
DNA (3621bp) protein (1207aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2AT54_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ31306.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
hypothetical protein
L3_082_090G1_scaffold_494_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8294..9439
DNA (1146bp) protein (382aa)
Cysteine desulfurase family protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SD03_9FIRM
Cysteine desulfurase family protein {ECO:0000313|EMBL:EDP21154.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
cysteine desulfurase family protein
L3_082_090G1_scaffold_494_8
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9458..11638
DNA (2181bp) protein (727aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2APU8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ31312.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
hypothetical protein
L3_082_090G1_scaffold_494_9
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11710..13914
DNA (2205bp) protein (735aa)
DNA repair protein {ECO:0000313|EMBL:KGJ51435.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
Helicase C-terminal domain protein id=2106388 bin=GWB2_Chloroflexi_54_36 species=Ruminococcus albus genus=Ruminococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
DNA-repair protein
L3_082_090G1_scaffold_494_10
unknown

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13898..14065
DNA (168bp) protein (56aa)

This feature has no annotations

L3_082_090G1_scaffold_494_11
Fusobacterium necrophorum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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14047..16038
DNA (1992bp) protein (664aa)
Putative DNA sulfur modification protein DndD n=2 Tax=Fusobacterium necrophorum subsp. funduliforme RepID=I3D9J8_9FUSO
Putative DNA sulfur modification protein DndD {ECO:0000313|EMBL:EIJ68391.1}; TaxID=1095747 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium necrophorum subsp. funduliforme ATCC 51357.;"
hypothetical protein
L3_082_090G1_scaffold_494_12
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

16051..16638
DNA (588bp) protein (196aa)
Putative uncharacterized protein n=2 Tax=Fibrobacter succinogenes (strain ATCC 19169 / S85) RepID=D9SC14_FIBSS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGJ51433.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
L3_082_090G1_scaffold_494_13
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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16792..17346
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LFE0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFY04461.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
G-D-S-L family lipolytic protein
L3_082_090G1_scaffold_494_14
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

17440..17793
DNA (354bp) protein (118aa)
UPF0122 protein HMPREF9443_01579 n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LFD9_9FIRM
UPF0122 protein HMPREF9443_01579 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
hypothetical protein
L3_082_090G1_scaffold_494_15
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


17799..19145
DNA (1347bp) protein (449aa)
Signal recognition particle protein n=2 Tax=Phascolarctobacterium succinatutens RepID=E8LFD8_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
signal recognition particle protein
L3_082_090G1_scaffold_494_16
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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19199..19471
DNA (273bp) protein (91aa)
30S ribosomal protein S16 n=2 Tax=Phascolarctobacterium succinatutens RepID=E8LFD7_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
30S ribosomal protein S16
L3_082_090G1_scaffold_494_17
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

19492..19719
DNA (228bp) protein (76aa)
UPF0109 protein HMPREF9443_01576 n=2 Tax=Phascolarctobacterium succinatutens RepID=E8LFD6_9FIRM
UPF0109 protein HMPREF9443_01576 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
hypothetical protein
L3_082_090G1_scaffold_494_18
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

19739..20143
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WRX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD09694.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
hypothetical protein
L3_082_090G1_scaffold_494_19
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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20147..20650
DNA (504bp) protein (168aa)
Ribosome maturation factor RimM n=2 Tax=Phascolarctobacterium succinatutens RepID=E8LFD4_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
16S rRNA processing protein rimM
L3_082_090G1_scaffold_494_20
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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20647..21468
DNA (822bp) protein (274aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WJW1_9FIRM
L3_082_090G1_scaffold_494_21
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

21461..22036
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WF17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD09688.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
hypothetical protein
L3_082_090G1_scaffold_494_22
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


22166..22507
DNA (342bp) protein (114aa)
50S ribosomal protein L19 n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6X062_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
ribosomal protein L19
L3_082_090G1_scaffold_494_23
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

22700..23272
DNA (573bp) protein (191aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
lepB; signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LFD0_9FIRM
L3_082_090G1_scaffold_494_24
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

23269..24129
DNA (861bp) protein (287aa)
Ribosome biogenesis GTPase A n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WT06_9FIRM
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
ribosome biogenesis GTP-binding protein YlqF
L3_082_090G1_scaffold_494_25
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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24204..25034
DNA (831bp) protein (277aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WG61_9FIRM
L3_082_090G1_scaffold_494_26
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

24991..25383
DNA (393bp) protein (131aa)
UPF0102 protein HMPREF9443_01567 n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LFC7_9FIRM
UPF0102 protein HMPREF9443_01567 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
endonuclease
L3_082_090G1_scaffold_494_27
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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25403..26923
DNA (1521bp) protein (507aa)
Mg chelatase-like protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LFC6_9FIRM
Mg chelatase-like protein {ECO:0000313|EMBL:EFY04447.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
Mg chelatase subunit ChlI
L3_082_090G1_scaffold_494_28
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

27051..28382
DNA (1332bp) protein (444aa)
Divergent AAA domain protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LFC5_9FIRM
Divergent AAA domain protein {ECO:0000313|EMBL:EFY04446.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
transcriptional regulator
L3_082_090G1_scaffold_494_29
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

28908..29924
DNA (1017bp) protein (339aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
trpD; anthranilate phosphoribosyltransferase TrpD (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6XYS3_9FIRM
L3_082_090G1_scaffold_494_30
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

29946..30725
DNA (780bp) protein (260aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
trpC; putative indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LES8_9FIRM
Displaying items 1-30 of 31 in total

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