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L3_082_090G1_scaffold_539

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_539_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

131..730
DNA (600bp) protein (200aa)
Uncharacterized conserved protein n=11 Tax=Bifidobacterium RepID=D6D959_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN24788.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_082_090G1_scaffold_539_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(900..1454)
DNA (555bp) protein (185aa)
DNA-3-methyladenine glycosylase I n=8 Tax=Bacteria RepID=D6D958_BIFLN
glycosylase
DNA-3-methyladenine glycosylase {ECO:0000313|EMBL:KEY32733.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_082_090G1_scaffold_539_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2267..5338)
DNA (3072bp) protein (1024aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
Glycosyl hydrolase family 2, TIM barrel domain protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AVM0_BIFLN
beta-galactosidase
L3_082_090G1_scaffold_539_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5380..5622
DNA (243bp) protein (81aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AVL7_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW44642.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_082_090G1_scaffold_539_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5693..7180
DNA (1488bp) protein (496aa)
Sugar transporter n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XWH4_9BIFI
Sugar transporter {ECO:0000313|EMBL:KFI69865.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
L3_082_090G1_scaffold_539_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7663..8112
DNA (450bp) protein (150aa)
Truncated beta-galactosidase n=9 Tax=Bacteria RepID=E8MSR0_BIFL1
truncated beta-galactosidase
Uncharacterized protein {ECO:0000313|EMBL:EEI81382.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_082_090G1_scaffold_539_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8831..10003
DNA (1173bp) protein (391aa)
Uncharacterized protein n=13 Tax=Bacteria RepID=Q8G5N5_BIFLO
hypothetical protein
ABC transporter permease {ECO:0000313|EMBL:AIW43601.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_082_090G1_scaffold_539_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10030..11367
DNA (1338bp) protein (446aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
3-phosphoshikimate 1-carboxyvinyltransferase n=6 Tax=Bifidobacterium RepID=AROA_BIFLD
3-phosphoshikimate 1-carboxyvinyltransferase
L3_082_090G1_scaffold_539_9

Not on your lists

comp(11615..12844)
DNA (1230bp) protein (410aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Acetate kinase n=13 Tax=Bacteria RepID=D6D950_BIFLN
ackA; acka
L3_082_090G1_scaffold_539_10
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12979..14679)
DNA (1701bp) protein (567aa)
Phosphate acetyltransferase n=5 Tax=Bifidobacterium RepID=I3AVN1_BIFLN
Phosphate acetyltransferase {ECO:0000313|EMBL:CCY95824.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
phosphate acetyltransferase
L3_082_090G1_scaffold_539_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15303..16001)
DNA (699bp) protein (233aa)
Fructose-2,6-bisphosphatase n=10 Tax=Bifidobacterium RepID=D6D949_BIFLN
hypothetical protein
Phosphoglycerate mutase {ECO:0000313|EMBL:KEY22011.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_082_090G1_scaffold_539_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16134..16547)
DNA (414bp) protein (138aa)
Ribosomal silencing factor RsfS n=14 Tax=Bifidobacterium RepID=D6D948_BIFLN
hypothetical protein
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_082_090G1_scaffold_539_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16551..17933)
DNA (1383bp) protein (461aa)
Bifunctional protein GlmU n=9 Tax=Bifidobacterium RepID=GLMU_BIFLO
UDP-N-acetylglucosamine pyrophosphorylase
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_082_090G1_scaffold_539_14
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18215..19237)
DNA (1023bp) protein (341aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
Ribose-phosphate pyrophosphokinase n=8 Tax=Bacteria RepID=E8MHR3_BIFL2
ribose-phosphate pyrophosphokinase
L3_082_090G1_scaffold_539_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19323..21197)
DNA (1875bp) protein (625aa)
Membrane protein with acetylase function n=2 Tax=Bifidobacterium longum subsp. longum RepID=F8AR36_BIFLN
Acyltransferase {ECO:0000313|EMBL:KHD96118.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
membrane protein with acetylase function
L3_082_090G1_scaffold_539_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21373..22959)
DNA (1587bp) protein (529aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GTV5_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:EEI81372.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
hypothetical protein
L3_082_090G1_scaffold_539_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23101..23484)
DNA (384bp) protein (128aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=B3DSP1_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEI81371.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_082_090G1_scaffold_539_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23477..24760)
DNA (1284bp) protein (428aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XWI7_9BIFI
Endonuclease {ECO:0000313|EMBL:KHD96121.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
hypothetical protein
L3_082_090G1_scaffold_539_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24761..25414)
DNA (654bp) protein (218aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=B3DSN9_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEI81369.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_082_090G1_scaffold_539_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25566..26021
DNA (456bp) protein (152aa)
Putative uncharacterized protein n=2 Tax=Bifidobacterium longum RepID=E8MSS4_BIFL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP83359.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
L3_082_090G1_scaffold_539_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26018..26890
DNA (873bp) protein (291aa)
Transporter, major facilitator family protein n=5 Tax=Bifidobacterium RepID=C2GTV1_BIFLN
permease
Transporter, major facilitator family protein {ECO:0000313|EMBL:EEI81368.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_082_090G1_scaffold_539_22
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27010..27204)
DNA (195bp) protein (65aa)
Transposase and inactivated derivative n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MVN0_9BIFI
transposase IS66
Transposase and inactivated derivative {ECO:0000313|EMBL:CCY95835.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Displaying 22 items

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