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L3_083_000G1_scaffold_3122

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_3122_1
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3..77)
DNA (75bp) protein (25aa)
Uncharacterized protein n=1 Tax=Parabacteroides distasonis CL03T12C09 RepID=K6ALM4_9PORP
integrase / site-specific recombinase
Integrase / site-specific recombinase {ECO:0000313|EMBL:ABR41914.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
L3_083_000G1_scaffold_3122_2
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

233..736
DNA (504bp) protein (168aa)
Uncharacterized protein n=8 Tax=Bacteroidales RepID=A6L9F7_PARD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFK61351.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
L3_083_000G1_scaffold_3122_3
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

741..1409
DNA (669bp) protein (223aa)
Pyridoxal phosphate enzyme YggS family n=1 Tax=Parabacteroides sp. CAG:2 RepID=R6JET3_9PORP
YggS family pyridoxal phosphate enzyme {ECO:0000313|EMBL:KEJ86037.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
hypothetical protein
L3_083_000G1_scaffold_3122_4
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1439..2416
DNA (978bp) protein (326aa)
dihydroorotate dehydrogenase 2 (EC:1.3.98.1)
Dihydroorotate dehydrogenase 2 {ECO:0000313|EMBL:EFK61353.1}; EC=1.3.98.1 {ECO:0000313|EMBL:EFK61353.1};; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
Dihydroorotate dehydrogenase family protein n=9 Tax=Bacteroidales RepID=A6L9F5_PARD8
L3_083_000G1_scaffold_3122_5
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2626..2991
DNA (366bp) protein (122aa)
Transcriptional regulator, MarR family n=9 Tax=Bacteroidales RepID=C7XA94_9PORP
transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EEU51171.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
L3_083_000G1_scaffold_3122_6
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3059..4978
DNA (1920bp) protein (640aa)
Pyridine nucleotide-disulphide oxidoreductase n=2 Tax=Parabacteroides RepID=A6L9F3_PARD8
Uncharacterized protein {ECO:0000313|EMBL:KEJ86034.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
pyridine nucleotide-disulfide oxidoreductase
L3_083_000G1_scaffold_3122_7
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5011..5466
DNA (456bp) protein (152aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TAN5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KEJ86033.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
pyridine nucleotide-disulfide oxidoreductase
L3_083_000G1_scaffold_3122_8
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5542..6816)
DNA (1275bp) protein (425aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Serine-tRNA ligase n=1 Tax=Parabacteroides sp. D25 RepID=K6BG73_9PORP
Serine-tRNA ligase {ECO:0000313|EMBL:EKN27068.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
L3_083_000G1_scaffold_3122_9
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6864..7403)
DNA (540bp) protein (180aa)
NlpC/P60 family protein n=7 Tax=Bacteroidales RepID=C7XA89_9PORP
lipoprotein
NlpC/P60 family protein {ECO:0000313|EMBL:KDS65448.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_083_000G1_scaffold_3122_10
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7533..8243)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. D25 RepID=K6ATF0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN27066.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
two-component system response regulator
L3_083_000G1_scaffold_3122_11
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8240..9025)
DNA (786bp) protein (262aa)
Histidine kinase superfamily n=1 Tax=Bacteroides sp. 3_1_19 RepID=D7IWH9_9BACE
Histidine kinase superfamily {ECO:0000313|EMBL:EFI07296.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
two-component system sensor histidine kinase
L3_083_000G1_scaffold_3122_12
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9025..9195)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Parabacteroides distasonis CL03T12C09 RepID=K6A5T2_9PORP
two-component system sensor histidine kinase
Histidine kinase {ECO:0000313|EMBL:EFK61359.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
L3_083_000G1_scaffold_3122_13
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9295..11289)
DNA (1995bp) protein (665aa)
Glycoside hydrolase family 97 n=1 Tax=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) RepID=A6L9E7_PARD8
Alpha-glucosidase {ECO:0000313|EMBL:KEJ86028.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
glycoside hydrolase
L3_083_000G1_scaffold_3122_14
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11372..13111
DNA (1740bp) protein (580aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. D25 RepID=K6BG68_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KEJ86027.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
acetylhydrolase
L3_083_000G1_scaffold_3122_15
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13124..13660)
DNA (537bp) protein (179aa)
Competence/damage-inducible domain protein CinA n=2 Tax=Parabacteroides RepID=E1YY07_9PORP
Competence/damage-inducible domain protein CinA {ECO:0000313|EMBL:EFK61362.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
competence-damage inducible protein
L3_083_000G1_scaffold_3122_16
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(13723..14742)
DNA (1020bp) protein (340aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
tRNA N6-adenosine threonylcarbamoyltransferase n=3 Tax=Parabacteroides RepID=E1YY08_9PORP
DNA-binding/iron metalloprotein/AP endonuclease
L3_083_000G1_scaffold_3122_17
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14882..19210
DNA (4329bp) protein (1443aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. D13 RepID=C7XA82_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EEU51159.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
hypothetical protein
L3_083_000G1_scaffold_3122_18
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19167..20099)
DNA (933bp) protein (311aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
tRNA-dihydrouridine synthase n=3 Tax=Parabacteroides RepID=A6L9E2_PARD8
dihydrouridine synthase
L3_083_000G1_scaffold_3122_19
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20101..20766)
DNA (666bp) protein (222aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
Octanoyltransferase n=6 Tax=Bacteroidales RepID=LIPB_PARD8
lipoate-protein ligase B
L3_083_000G1_scaffold_3122_20
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20712..21512)
DNA (801bp) protein (267aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055699};; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
Glycosyltransferase family 51, candidate monofunctional monofunctional peptidoglycan glycosyltransferase n=1 Tax=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) RepID=A6L9E0_PARD8
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase
L3_083_000G1_scaffold_3122_21
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21653..23311
DNA (1659bp) protein (553aa)
AMP-binding enzyme n=9 Tax=Bacteroidales RepID=C7XA78_9PORP
Long-chain acyl-CoA synthetase {ECO:0000313|EMBL:KEJ86019.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
long-chain-fatty-acid--CoA ligase
L3_083_000G1_scaffold_3122_22
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23362..23871)
DNA (510bp) protein (170aa)
RNA polymerase ECF-type sigma factor n=8 Tax=Bacteroidales RepID=A6L9D8_PARD8
RNA polymerase ECF-type sigma factor
Sigma-70 region 2 {ECO:0000313|EMBL:EFK61369.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
L3_083_000G1_scaffold_3122_23
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24137..25516
DNA (1380bp) protein (460aa)
Putative endopeptidase Clp n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TAM0_9BACE
Putative endopeptidase Clp {ECO:0000313|EMBL:EEY84283.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
membrane-bound serine protease
L3_083_000G1_scaffold_3122_24
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25523..26158)
DNA (636bp) protein (212aa)
Uncharacterized protein n=7 Tax=Bacteroidales RepID=A6L9D6_PARD8
Uncharacterized protein {ECO:0000313|EMBL:KEJ86016.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
hypothetical protein
L3_083_000G1_scaffold_3122_25
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26229..28229
DNA (2001bp) protein (667aa)
TrkA C-terminal domain protein n=2 Tax=Bacteroidales RepID=C7XA74_9PORP
CPA2 family monovalent cation:H+ antiporter-2 {ECO:0000313|EMBL:KEJ86015.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
Na+/H+ antiporter
L3_083_000G1_scaffold_3122_26
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28244..28999
DNA (756bp) protein (252aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Bacteroides sp. 3_1_19 RepID=D7IWG5_9BACE
L3_083_000G1_scaffold_3122_27
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29016..30740)
DNA (1725bp) protein (575aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=A6L9D3_PARD8
Uncharacterized protein {ECO:0000313|EMBL:KEJ86013.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
hypothetical protein
L3_083_000G1_scaffold_3122_28
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30989..32890)
DNA (1902bp) protein (634aa)
Membrane protein insertase YidC n=2 Tax=Parabacteroides distasonis RepID=YIDC_PARD8
inner membrane protein translocase component YidC
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=999416 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL03T12C09.;"
L3_083_000G1_scaffold_3122_29
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32901..34508)
DNA (1608bp) protein (536aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase n=6 Tax=Bacteroidales RepID=C7XA70_9PORP
L3_083_000G1_scaffold_3122_30
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34929..36470
DNA (1542bp) protein (514aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=E1YY23_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EFK61378.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
hypothetical protein
Displaying items 1-30 of 52 in total

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