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L3_083_000G1_scaffold_1208

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_1208_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..533)
DNA (531bp) protein (177aa)
Lacto-N-biose phosphorylase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFZ8_BIFBI
lacto-N-biose phosphorylase
Lacto-N-biose phosphorylase 2 {ECO:0000313|EMBL:ADO52461.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_000G1_scaffold_1208_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(681..1217)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CIN0_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42341.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L3_083_000G1_scaffold_1208_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1214..2032)
DNA (819bp) protein (273aa)
Short chain dehydrogenase {ECO:0000313|EMBL:KFI42340.1}; EC=1.1.1.100 {ECO:0000313|EMBL:KFI42340.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Short chain dehydrogenase n=4 Tax=Bifidobacterium bifidum RepID=E4NYY6_BIFBP
3-oxoacyl-ACP reductase
L3_083_000G1_scaffold_1208_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2095..2469)
DNA (375bp) protein (125aa)
Putative mandelate racemase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2L9Y9_BIFBI
Putative mandelate racemase {ECO:0000313|EMBL:EKF14754.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
menC; putative mandelate racemase
L3_083_000G1_scaffold_1208_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2720..2860)
DNA (141bp) protein (47aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELR2_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52457.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_000G1_scaffold_1208_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3052..4068
DNA (1017bp) protein (339aa)
HTH-type transcriptional repressor n=4 Tax=Bifidobacterium RepID=I3WFZ3_BIFBI
cytR; HTH-type transcriptional repressor
HTH-type transcriptional repressor {ECO:0000313|EMBL:CDB23251.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_000G1_scaffold_1208_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4504..5193
DNA (690bp) protein (230aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=E4V7K6_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF14758.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_083_000G1_scaffold_1208_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5292..6278)
DNA (987bp) protein (329aa)
Thioredoxin n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFZ1_BIFBI
thioredoxin
Thioredoxin {ECO:0000313|EMBL:AFL03804.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_083_000G1_scaffold_1208_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6527..7540)
DNA (1014bp) protein (338aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELQ8_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52453.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_000G1_scaffold_1208_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7533..8606)
DNA (1074bp) protein (358aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELQ7_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52452.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_000G1_scaffold_1208_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8697..9686
DNA (990bp) protein (330aa)
fkbP; peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYX8_BIFBP
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_083_000G1_scaffold_1208_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(9940..10632)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=8 Tax=Bifidobacterium RepID=E3ELQ4_BIFBS
rlpA; 50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_000G1_scaffold_1208_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(10647..11078)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=8 Tax=Bifidobacterium RepID=E3ELQ3_BIFBS
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_083_000G1_scaffold_1208_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11402..12343)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HUK4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50142.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_083_000G1_scaffold_1208_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12543..13253
DNA (711bp) protein (237aa)
Transcriptional regulator, TetR family n=3 Tax=Bifidobacterium RepID=E3ELQ1_BIFBS
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ADO52446.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_000G1_scaffold_1208_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13475..14812
DNA (1338bp) protein (446aa)
ABC transporter, permease n=3 Tax=Bifidobacterium bifidum RepID=I3WFY2_BIFBI
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:EKF15190.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_083_000G1_scaffold_1208_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14909..16234)
DNA (1326bp) protein (442aa)
murA; UDP-N-acetylglucosamine1-carboxyvinyl transferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|SAAS:SAAS00085344};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=8 Tax=Bifidobacterium RepID=E3ELP9_BIFBS
L3_083_000G1_scaffold_1208_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16513..17766)
DNA (1254bp) protein (418aa)
Dihydroorotate oxidase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2C0A9_BIFBI
Pyr Dihydroorotate dehydrogenase {ECO:0000313|EMBL:KFI42328.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
dihydroorotate dehydrogenase
L3_083_000G1_scaffold_1208_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17791..18897)
DNA (1107bp) protein (369aa)
CAAX amino terminal protease family protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CIL4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42327.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
CAAX amino terminal protease
L3_083_000G1_scaffold_1208_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19026..19199)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7J1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49583.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_083_000G1_scaffold_1208_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19790..20170)
DNA (381bp) protein (127aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=E4V7I9_BIFBI
hypothetical protein
Putative cell surface protein {ECO:0000313|EMBL:BAQ97427.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_083_000G1_scaffold_1208_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20245..24264)
DNA (4020bp) protein (1340aa)
SNF2 family N-terminal domain protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7I8_BIFBI
SNF2 family N-terminal domain protein {ECO:0000313|EMBL:EFR49580.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
helicase
L3_083_000G1_scaffold_1208_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24423..25115)
DNA (693bp) protein (231aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELP4_BIFBS
leuD; 3-isopropylmalate dehydratase small subunit
L3_083_000G1_scaffold_1208_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25267..26670)
DNA (1404bp) protein (468aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
3-isopropylmalate dehydratase large subunit n=7 Tax=Bifidobacterium bifidum RepID=E3ELP3_BIFBS
leuC; 3-isopropylmalate dehydratase large subunit
L3_083_000G1_scaffold_1208_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26978..27799
DNA (822bp) protein (274aa)
HTH-type transcriptional regulator n=2 Tax=Bifidobacterium bifidum RepID=I3WFX4_BIFBI
kipR; HTH-type transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:KFI42322.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_083_000G1_scaffold_1208_26
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27938..29227)
DNA (1290bp) protein (430aa)
Phosphoesterase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GRE7_9BIFI
Phosphoesterase {ECO:0000313|EMBL:CDB23821.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
phosphoesterase
L3_083_000G1_scaffold_1208_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30298..30582
DNA (285bp) protein (95aa)
ATPase AAA n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H8B9_BIFBI
ATPase AAA {ECO:0000313|EMBL:EKE50216.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ATPase AAA
L3_083_000G1_scaffold_1208_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30548..31078
DNA (531bp) protein (177aa)
ATPase (AAA+ superfamily)-like protein n=3 Tax=Bifidobacterium bifidum RepID=E4NYW2_BIFBP
ATPase AAA
Uncharacterized protein {ECO:0000313|EMBL:ERI83888.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_083_000G1_scaffold_1208_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31320..31919)
DNA (600bp) protein (200aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Glutamate--tRNA ligase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HS66_BIFBI
gltX1; glutamyl-tRNA synthetase
L3_083_000G1_scaffold_1208_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31930..32712)
DNA (783bp) protein (261aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Glutamate--tRNA ligase n=5 Tax=Bifidobacterium bifidum RepID=E3ELN8_BIFBS
Displaying items 1-30 of 50 in total

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