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L3_083_000G1_scaffold_1235

Search features with annotation key words

Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_1235_1
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..71)
DNA (69bp) protein (23aa)
Transcription termination/antitermination protein NusG n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XMQ5_9CLOT
NusG antitermination factor
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L3_083_000G1_scaffold_1235_2
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(93..347)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6B2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44551.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Preprotein translocase subunit SecE
L3_083_000G1_scaffold_1235_3
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(673..1284)
DNA (612bp) protein (204aa)
ComF family protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EW08_9FIRM
DNA utilization protein GntX {ECO:0000313|EMBL:KJJ74802.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
phosphoribosyltransferase
L3_083_000G1_scaffold_1235_4
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1298..3643)
DNA (2346bp) protein (782aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
RecD/TraA family helicase (EC:3.1.11.5)
Uncharacterized protein n=3 Tax=Clostridium bolteae RepID=A8S472_9CLOT
L3_083_000G1_scaffold_1235_5
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3721..4257)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6B6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44556.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
rod shape-determining protein MreB
L3_083_000G1_scaffold_1235_6
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4235..4717)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6B6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44556.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
MreB/Mrl family cell shape determining protein
L3_083_000G1_scaffold_1235_7
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5660..6496
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HRX1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE95838.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
Site-specific recombinase XerD
L3_083_000G1_scaffold_1235_8
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6493..7416
DNA (924bp) protein (308aa)
Phage integrase n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9YD75_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP17005.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
integrase family protein
L3_083_000G1_scaffold_1235_9
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7500..8600
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IXN1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41471.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Predicted membrane protein
L3_083_000G1_scaffold_1235_10
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8849..10585)
DNA (1737bp) protein (579aa)
alpha-phosphoglucomutase (EC:5.4.2.8 5.4.2.2)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IXH3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41472.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L3_083_000G1_scaffold_1235_11
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10690..11871)
DNA (1182bp) protein (394aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Transcription termination factor Rho n=1 Tax=Clostridium sp. CAG:7 RepID=R5IMF5_9CLOT
transcription termination factor Rho
L3_083_000G1_scaffold_1235_12
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12520..13836)
DNA (1317bp) protein (439aa)
Recombination factor protein RarA n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CU38_9CLOT
Recombination factor protein RarA {ECO:0000313|EMBL:EEG57396.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
ATPase AAA
L3_083_000G1_scaffold_1235_13
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13890..14579)
DNA (690bp) protein (230aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HNA4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE97108.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
polysaccharide deacetylase
L3_083_000G1_scaffold_1235_14
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14721..16625)
DNA (1905bp) protein (635aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IMG0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41479.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
glycoside hydrolase
L3_083_000G1_scaffold_1235_15
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16822..17877)
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IHD5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41480.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
cell wall binding repeat-containing protein
L3_083_000G1_scaffold_1235_16
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18068..19939)
DNA (1872bp) protein (624aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5EZ91_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX98030.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
choline/ethanolamine kinase
L3_083_000G1_scaffold_1235_17
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20120..21538)
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6S3V8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC49986.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_083_000G1_scaffold_1235_18
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21525..22943)
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NSJ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN00947.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
ABC-type uncharacterized transport system.
L3_083_000G1_scaffold_1235_19
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22943..23806)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RX95_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC49984.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_083_000G1_scaffold_1235_20
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23803..24756)
DNA (954bp) protein (318aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RM53_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDC49983.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
putative ABC transporter ATP-binding protein
L3_083_000G1_scaffold_1235_21
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24860..26068)
DNA (1209bp) protein (403aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
putative two-component histidine kinase (EC:2.7.13.3)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYG3_9FIRM
L3_083_000G1_scaffold_1235_22
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26058..26738)
DNA (681bp) protein (227aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C9W3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO34603.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
winged helix family two component transcriptional regulator
L3_083_000G1_scaffold_1235_23
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26889..29003)
DNA (2115bp) protein (705aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IXI6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41482.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
glutamine synthetase
L3_083_000G1_scaffold_1235_24
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29291..30160)
DNA (870bp) protein (290aa)
Fructose-1,6-bisphosphate aldolase, class II {ECO:0000313|EMBL:EEG57412.1}; EC=4.1.2.13 {ECO:0000313|EMBL:EEG57412.1};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist (EC:4.1.2.13)
Fructose-1,6-bisphosphate aldolase, class II n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CU23_9CLOT
L3_083_000G1_scaffold_1235_25
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30274..31770)
DNA (1497bp) protein (499aa)
threonine synthase (EC:4.2.3.1)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IXQ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41491.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L3_083_000G1_scaffold_1235_26
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32033..32764
DNA (732bp) protein (244aa)
ABC transporter related protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IMK6_9CLOT
ABC transporter related protein {ECO:0000313|EMBL:CCY41499.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ABC transporter
L3_083_000G1_scaffold_1235_27
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32825..33700
DNA (876bp) protein (292aa)
Extracellular solute-binding protein family 3 n=1 Tax=Clostridium sp. CAG:7 RepID=R5IML4_9CLOT
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:CCY41504.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
family 3 extracellular solute-binding protein
L3_083_000G1_scaffold_1235_28
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33723..34460
DNA (738bp) protein (246aa)
Polar amino acid ABC transporter inner membrane subunit n=1 Tax=Clostridium sp. CAG:7 RepID=R5IHJ8_9CLOT
Polar amino acid ABC transporter inner membrane subunit {ECO:0000313|EMBL:CCY41505.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
polar amino acid ABC transporter inner membrane subunit
L3_083_000G1_scaffold_1235_29
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34457..35119
DNA (663bp) protein (221aa)
Polar amino acid ABC transporter inner membrane subunit n=1 Tax=Clostridium sp. CAG:7 RepID=R5IXV0_9CLOT
Polar amino acid ABC transporter inner membrane subunit {ECO:0000313|EMBL:CCY41506.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
polar amino acid ABC transporter inner membrane subunit
L3_083_000G1_scaffold_1235_30
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35147..35686
DNA (540bp) protein (180aa)
Cytidylate kinase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IMM2_9CLOT
Cytidylate kinase {ECO:0000313|EMBL:CCY41509.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
cytidylate kinase
Displaying items 1-30 of 85 in total

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