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L3_083_000G1_scaffold_1309

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_1309_1
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(138..761)
DNA (624bp) protein (208aa)
Phosphate transport regulator (Distant homolog of PhoU) n=4 Tax=Clostridiales RepID=D4MP50_9FIRM
Phosphate transport regulator (distant homolog of PhoU)
Phosphate transport regulator (Distant homolog of PhoU) {ECO:0000313|EMBL:CCY82385.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_083_000G1_scaffold_1309_2
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(777..1832)
DNA (1056bp) protein (352aa)
Phosphate/sulphate permeases n=3 Tax=Clostridium RepID=D6DH39_CLOSC
Phosphate/sulphate permeases
Phosphate transporter family protein {ECO:0000313|EMBL:EFE14014.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_083_000G1_scaffold_1309_3
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2063..2881)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6KFI2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB60957.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
hypothetical protein
L3_083_000G1_scaffold_1309_4
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2974..4215)
DNA (1242bp) protein (414aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=N9ZNE0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ53422.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
L3_083_000G1_scaffold_1309_5
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4212..5288)
DNA (1077bp) protein (359aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
tRNA-specific 2-thiouridylase MnmA n=2 Tax=Clostridium RepID=R0BFS6_9CLOT
tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
L3_083_000G1_scaffold_1309_6
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5285..5722)
DNA (438bp) protein (146aa)
FeS cluster assembly scaffold protein NifU n=10 Tax=Clostridium RepID=G5I6V3_9CLOT
FeS cluster assembly scaffold protein NifU {ECO:0000313|EMBL:ENZ17863.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L3_083_000G1_scaffold_1309_7
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5749..6933)
DNA (1185bp) protein (395aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase NifS n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQ56_9FIRM
L3_083_000G1_scaffold_1309_8
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7126..8556)
DNA (1431bp) protein (477aa)
Amino acid transporters n=3 Tax=Clostridium RepID=D6DES4_CLOSC
Amino acid transporters
Amino acid permease {ECO:0000313|EMBL:EFE11639.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_083_000G1_scaffold_1309_9
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8660..9370)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQB6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ60210.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
DNA alkylation repair protein
L3_083_000G1_scaffold_1309_10
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9386..10579)
DNA (1194bp) protein (398aa)
Uncharacterized protein n=4 Tax=Clostridium bolteae RepID=A8RYW7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP14707.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
oxygen-independent coproporphyrinogen III oxidase
L3_083_000G1_scaffold_1309_11
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10601..12415)
DNA (1815bp) protein (605aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
Elongation factor 4 n=4 Tax=Clostridium RepID=N9XJV1_9CLOT
GTP-binding protein LepA
L3_083_000G1_scaffold_1309_12
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12722..14002)
DNA (1281bp) protein (427aa)
Stage II sporulation protein P n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CYZ3_9CLOT
Stage II sporulation protein P {ECO:0000313|EMBL:EEG55699.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
stage II sporulation protein P
L3_083_000G1_scaffold_1309_13
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14086..15087)
DNA (1002bp) protein (334aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
spore protease (EC:3.4.24.78)
Germination protease n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HSG2_9CLOT
L3_083_000G1_scaffold_1309_14
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15311..15574
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=18 Tax=Clostridium RepID=A8RYW2_9CLOT
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
30S ribosomal protein S20
L3_083_000G1_scaffold_1309_15
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15656..16228)
DNA (573bp) protein (191aa)
TIGR01440 family protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CYU4_9CLOT
UPF0340 protein CLOSTASPAR_02171 {ECO:0000256|HAMAP-Rule:MF_00800}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
conserved hypothetical protein TIGR01440
L3_083_000G1_scaffold_1309_16
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16265..17242)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JX21_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB63374.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
DNA polymerase III subunit delta
L3_083_000G1_scaffold_1309_17
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17247..17495)
DNA (249bp) protein (83aa)
Protein-tyrosine-phosphatase (EC:3.1.3.48)
Protein-tyrosine phosphatase n=8 Tax=Clostridium clostridioforme RepID=N9WJH0_9CLOT
Protein-tyrosine phosphatase {ECO:0000313|EMBL:ENZ17989.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L3_083_000G1_scaffold_1309_18
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17569..19251)
DNA (1683bp) protein (561aa)
Site-specific DNA recombinase n=1 Tax=Clostridium sp. CAG:277 RepID=R7JXH7_9CLOT
Site-specific DNA recombinase {ECO:0000313|EMBL:CDE68715.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_083_000G1_scaffold_1309_19
unknown

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comp(19490..19768)
DNA (279bp) protein (93aa)

This feature has no annotations

L3_083_000G1_scaffold_1309_20
unknown

Not on your lists

comp(19850..20260)
DNA (411bp) protein (137aa)

This feature has no annotations

L3_083_000G1_scaffold_1309_21
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20262..20573)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7JXP4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE68719.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
L3_083_000G1_scaffold_1309_22
unknown

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comp(20587..20841)
DNA (255bp) protein (85aa)

This feature has no annotations

L3_083_000G1_scaffold_1309_23
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20854..21204)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7K118_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE68722.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
L3_083_000G1_scaffold_1309_24
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21315..21668)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7JYP8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE68723.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
L3_083_000G1_scaffold_1309_25
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21694..22011)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7JXQ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE68724.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
L3_083_000G1_scaffold_1309_26
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22008..22403)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7K142_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE68727.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
hypothetical protein
L3_083_000G1_scaffold_1309_27
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22405..22773)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7JYS4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE68728.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
L3_083_000G1_scaffold_1309_28
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22817..25693)
DNA (2877bp) protein (959aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7JXS5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE68729.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
hypothetical protein
L3_083_000G1_scaffold_1309_29
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25740..25943)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7JXL8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE68730.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
L3_083_000G1_scaffold_1309_30
unknown

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comp(25947..26627)
DNA (681bp) protein (227aa)

This feature has no annotations

Displaying items 1-30 of 48 in total

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