ggKbase home page

L3_083_000G1_scaffold_8

Search features with annotation key words

Displaying items 1-30 of 255 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_8_1
Melampsora larici-populina, Melampsora, Pucciniales, Pucciniomycetes, Basidiomycota, Fungi

Not on your lists

1..102
DNA (102bp) protein (34aa)
Putative uncharacterized protein n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) RepID=F4RC50_MELLP
Putative uncharacterized protein {ECO:0000313|EMBL:EGG10217.1}; TaxID=747676 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Pucciniomycetes; Pucciniales; Melampsoraceae; Melampsora.;" source="Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) (Poplar; leaf rust fungus).;"
L3_083_000G1_scaffold_8_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(308..1885)
DNA (1578bp) protein (526aa)
Cell wall binding repeat 2 family protein n=12 Tax=Clostridium difficile RepID=T2UP05_CLODI
Cell wall binding repeat 2 family protein {ECO:0000313|EMBL:EQE60155.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
cwp5; putative cell surface protein cwp5
L3_083_000G1_scaffold_8_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2182..4593)
DNA (2412bp) protein (804aa)
Cell wall binding repeat 2 family protein n=2 Tax=Clostridium difficile RepID=T4PAK7_CLODI
cwp84; cell surface-associated cysteine protease
Papain family cysteine protease {ECO:0000313|EMBL:EHJ33206.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_083_000G1_scaffold_8_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4821..5216
DNA (396bp) protein (132aa)
GtrA-like family protein n=2 Tax=Clostridium difficile RepID=T4PGG6_CLODI
Putative cell wall teichoic acid glycosylation protein GtcA {ECO:0000313|EMBL:EHJ33207.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
putative membrane protein, GtrA family
L3_083_000G1_scaffold_8_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5270..7102)
DNA (1833bp) protein (611aa)
Cell wall binding repeat 2 family protein n=3 Tax=Clostridium difficile RepID=T4PGC9_CLODI
Cwp66 {ECO:0000313|EMBL:AAG13990.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
cwp66; cell surface protein
L3_083_000G1_scaffold_8_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7135..7842)
DNA (708bp) protein (236aa)
Uncharacterized protein n=22 Tax=Clostridium difficile RepID=C9XP95_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE06193.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_083_000G1_scaffold_8_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7949..9820)
DNA (1872bp) protein (624aa)
Cell wall binding repeat 2 family protein n=2 Tax=Clostridium difficile RepID=T4PGQ3_CLODI
cwp2; Cell wall binding protein cwp2
Cell wall binding protein cwp2 {ECO:0000313|EMBL:CAJ69679.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_083_000G1_scaffold_8_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10235..12580)
DNA (2346bp) protein (782aa)
Protein translocase subunit SecA n=2 Tax=Clostridium difficile RepID=T4PAL2_CLODI
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
secA2; Protein translocase subunit secA 2
L3_083_000G1_scaffold_8_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12827..15001)
DNA (2175bp) protein (725aa)
Cell wall binding repeat 2 family protein n=3 Tax=Clostridium difficile RepID=T4PGH1_CLODI
SlpA {ECO:0000313|EMBL:AAF89093.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
slpA; Precursor of the S-layer proteins
L3_083_000G1_scaffold_8_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15211..16797)
DNA (1587bp) protein (529aa)
Cell wall binding protein cwp12 {ECO:0000313|EMBL:CEJ99422.1}; Surface protein {ECO:0000313|EMBL:CKH87412.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CKH87412.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Bacterial Ig-like domain family protein n=2 Tax=Clostridium difficile RepID=T4PGD3_CLODI
cwp12; Cell wall binding protein cwp12
L3_083_000G1_scaffold_8_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17016..18668)
DNA (1653bp) protein (551aa)
Cell surface protein {ECO:0000313|EMBL:CKH87441.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CKH87441.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Cell wall binding protein n=3 Tax=Clostridium difficile RepID=U3WH97_CLODI
cwp11; Cell wall binding protein cwp11
L3_083_000G1_scaffold_8_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18984..20864)
DNA (1881bp) protein (627aa)
Cell wall binding repeat 2 family protein n=2 Tax=Clostridium difficile RepID=T4PGQ8_CLODI
Cell wall binding repeat 2 family protein {ECO:0000313|EMBL:EQE60255.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
cwp10; Cell surface protein cwp10
L3_083_000G1_scaffold_8_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21074..27037)
DNA (5964bp) protein (1988aa)
Fibronectin type III domain protein n=2 Tax=Clostridium difficile RepID=T4PAL6_CLODI
Fibronectin type III domain protein {ECO:0000313|EMBL:EQE60217.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
putative calcium-binding adhesion protein
L3_083_000G1_scaffold_8_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27418..28851)
DNA (1434bp) protein (478aa)
Cell wall binding repeat 2 family protein n=2 Tax=Clostridium difficile RepID=T4PGH6_CLODI
SCP-like protein {ECO:0000313|EMBL:EHJ33217.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
cell surface protein
L3_083_000G1_scaffold_8_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29283..31178)
DNA (1896bp) protein (632aa)
Cell wall binding repeat 2 family protein n=2 Tax=Clostridium difficile RepID=T4PGD9_CLODI
Cell wall binding repeat 2 family protein {ECO:0000313|EMBL:EQG74568.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
cwp8; Cell wall binding protein cwp8
L3_083_000G1_scaffold_8_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31802..31945)
DNA (144bp) protein (48aa)
Uncharacterized protein n=214 Tax=Clostridium difficile RepID=T3G9T2_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA62882.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_083_000G1_scaffold_8_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32011..32373)
DNA (363bp) protein (121aa)
Uncharacterized protein n=115 Tax=Clostridium difficile RepID=T3G8N3_CLODC
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL31097.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_083_000G1_scaffold_8_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32431..32724)
DNA (294bp) protein (98aa)
Preprotein translocase, YajC subunit n=214 Tax=Clostridium difficile RepID=C9XPA6_CLODC
putative protein translocase subunit
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EHJ33222.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_083_000G1_scaffold_8_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32858..33979)
DNA (1122bp) protein (374aa)
tgt; Queuine tRNA-ribosyltransferase (tRNA-guaninetransglycosylase) (Guanine insertion enzyme) (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Queuine tRNA-ribosyltransferase n=186 Tax=Clostridium difficile RepID=T3GDW5_CLODC
L3_083_000G1_scaffold_8_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34058..34543)
DNA (486bp) protein (162aa)
Uncharacterized protein n=214 Tax=Clostridium difficile RepID=G6B4N2_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL31100.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_083_000G1_scaffold_8_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34555..35580)
DNA (1026bp) protein (342aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=111 Tax=Clostridium difficile RepID=T2TE61_CLODI
L3_083_000G1_scaffold_8_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35898..36917)
DNA (1020bp) protein (340aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Holliday junction ATP-dependent DNA helicase RuvB n=203 Tax=Clostridium difficile RepID=RUVB_CLOD6
L3_083_000G1_scaffold_8_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37024..37626)
DNA (603bp) protein (201aa)
ruvA; Holliday junction ATP-dependent DNA helicaseRuvA (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Holliday junction ATP-dependent DNA helicase RuvA n=194 Tax=Clostridium difficile RepID=T3GDX6_CLODC
L3_083_000G1_scaffold_8_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37619..38128)
DNA (510bp) protein (170aa)
ruvC; Holliday junction resolvase (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Crossover junction endodeoxyribonuclease RuvC n=84 Tax=Clostridium difficile RepID=RUVC_CLOD6
L3_083_000G1_scaffold_8_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38440..39069)
DNA (630bp) protein (210aa)
Uncharacterized protein n=167 Tax=Clostridium difficile RepID=T3GD12_CLODC
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH87907.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS88534.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_083_000G1_scaffold_8_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39272..39595
DNA (324bp) protein (108aa)
Uncharacterized protein n=126 Tax=Clostridium difficile RepID=C9XPB4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK99303.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_083_000G1_scaffold_8_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39863..40717
DNA (855bp) protein (285aa)
Uncharacterized protein n=138 Tax=Clostridium difficile RepID=G6BTD6_CLODI
hypothetical protein
Predicted membrane protein {ECO:0000313|EMBL:CKH87960.1}; Putative membrane protein {ECO:0000313|EMBL:CDS89157.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_083_000G1_scaffold_8_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40903..42339)
DNA (1437bp) protein (479aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PGJ0_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE60191.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
conserved hypothetical protein
L3_083_000G1_scaffold_8_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42410..43792)
DNA (1383bp) protein (461aa)
H+ symporter family protein n=130 Tax=Clostridium difficile RepID=T3GBC4_CLODC
Gluconate permease {ECO:0000313|EMBL:CKH88013.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
gluconate permease
L3_083_000G1_scaffold_8_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43928..44818)
DNA (891bp) protein (297aa)
garR; Tartronate semialdehyde reductase (EC:1.1.1.60)
Tartronate semialdehyde reductase {ECO:0000313|EMBL:CAJ69701.1}; EC=1.1.1.60 {ECO:0000313|EMBL:CAJ69701.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
2-hydroxy-3-oxopropionate reductase n=4 Tax=Clostridium difficile RepID=T4PHG8_CLODI
Displaying items 1-30 of 255 in total

View Taxonomy