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L3_083_000G1_scaffold_32

Search features with annotation key words

Displaying items 1-30 of 169 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_32_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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130..1347
DNA (1218bp) protein (406aa)
Phosphotransferase system, C component n=12 Tax=Clostridium difficile RepID=C9XMS1_CLODC
ulaA; PTS system ascorbate-specific transporter subunit IIC
Phosphotransferase system, C component {ECO:0000313|EMBL:CCL30790.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_083_000G1_scaffold_32_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1350..2090
DNA (741bp) protein (247aa)
SIS domain protein n=44 Tax=Clostridium difficile RepID=T3GG38_CLODC
hypothetical protein
Putative phosphosugar isomerase {ECO:0000313|EMBL:CCL22904.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_083_000G1_scaffold_32_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2103..2213
DNA (111bp) protein (37aa)
Uncharacterized protein n=1 Tax=Clostridium difficile (strain 630) RepID=Q182N9_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ69438.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_083_000G1_scaffold_32_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2413..3723
DNA (1311bp) protein (437aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Clostridium difficile RepID=UPI00016C5CB6
sugar transporter, substrate-binding lipoprotein
Putative sugar transporter, substrate-binding lipoprotein {ECO:0000313|EMBL:CBE05760.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_083_000G1_scaffold_32_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3821..4738
DNA (918bp) protein (306aa)
Binding--dependent transport system inner membrane component family protein n=53 Tax=Clostridium difficile RepID=T2TK14_CLODI
sugar transporter permease
Putative sugar transporter, permease protein {ECO:0000313|EMBL:CBE05758.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_083_000G1_scaffold_32_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4754..5563
DNA (810bp) protein (270aa)
Binding--dependent transport system inner membrane component family protein n=162 Tax=Clostridium difficile RepID=C9XMR7_CLODC
sugar transporter permease
ABC-type transport system, sugar-family permease {ECO:0000313|EMBL:CCL30786.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_083_000G1_scaffold_32_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5621..7369
DNA (1749bp) protein (583aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PM49_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE60824.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
conserved hypothetical protein
L3_083_000G1_scaffold_32_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7673..8653
DNA (981bp) protein (327aa)
Endoglucanase (Cellulase) {ECO:0000313|EMBL:CDS88444.1}; EC=3.2.1.4 {ECO:0000313|EMBL:CDS88444.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Endoglucanase (cellulase) (EC:3.2.1.4)
Endoglucanase n=9 Tax=Clostridium difficile RepID=T3HJV0_CLODI
L3_083_000G1_scaffold_32_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8658..10964
DNA (2307bp) protein (769aa)
Cellulose synthase catalytic subunit (UDP-forming) {ECO:0000313|EMBL:CDT65578.1}; EC=2.4.1.12 {ECO:0000313|EMBL:CDT65578.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
bcsA; Cellulose synthase catalytic subunit(UDP-forming) (EC:2.4.1.12)
Glycosyl transferase 2 family protein n=6 Tax=Clostridium difficile PF1_CLODI">RepID=T2UPF1_CLODI
L3_083_000G1_scaffold_32_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10975..12051
DNA (1077bp) protein (359aa)
Putative membrane protein n=3 Tax=Clostridium difficile RepID=T4PMG9_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQE60799.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
conserved hypothetical protein
L3_083_000G1_scaffold_32_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12069..13487
DNA (1419bp) protein (473aa)
membrane-bound O-acyl transferase (EC:2.3.1.-)
Putative membrane-bound 0-ACYL transferase,MBOAT family {ECO:0000313|EMBL:CAJ69430.1}; EC=2.3.1.- {ECO:0000313|EMBL:CAJ69430.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
MBOAT, membrane-bound O-acyltransferase family protein n=87 Tax=Clostridium difficile RepID=T4ALQ2_CLODI
L3_083_000G1_scaffold_32_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13502..14710
DNA (1209bp) protein (403aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4Z957_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ69429.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_083_000G1_scaffold_32_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14791..16179)
DNA (1389bp) protein (463aa)
Dicarboxylate family transmembrane symporter n=2 Tax=Clostridium difficile RepID=T4NJM5_CLODI
Dicarboxylate family transmembrane symporter {ECO:0000313|EMBL:EQH98504.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
sodium:glutamate/aspartate symporter family protein
L3_083_000G1_scaffold_32_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16520..17854
DNA (1335bp) protein (445aa)
Pyridine nucleotide-disulfide oxidoreductase family protein n=7 Tax=Clostridium difficile RepID=T3SYF1_CLODI
Pyridine nucleotide-disulfide oxidoreductase family protein {ECO:0000313|EMBL:EQI80538.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
coenzyme A disulfide reductase
L3_083_000G1_scaffold_32_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17983..18900)
DNA (918bp) protein (306aa)
rnz; Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3endonuclease) (EC:3.1.26.11)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Ribonuclease Z n=196 Tax=Clostridium difficile RepID=RNZ_CLOD6
L3_083_000G1_scaffold_32_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19108..19992
DNA (885bp) protein (295aa)
Uncharacterized protein n=23 Tax=Clostridium difficile RepID=T2WD50_CLODI
Putative lipoprotein {ECO:0000313|EMBL:CCL22891.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative lipoprotein
L3_083_000G1_scaffold_32_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20205..22046
DNA (1842bp) protein (614aa)
Putative membrane-associated 5'-nucleotidase/phosphoesterase {ECO:0000313|EMBL:CCL22890.1}; EC=3.1.3.5 {ECO:0000313|EMBL:CCL22890.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative membrane-associated5'-nucleotidase/phosphoesterase (EC:3.1.3.5)
Calcineurin-like phosphoesterase family protein n=41 Tax=Clostridium difficile RepID=T2V115_CLODI
L3_083_000G1_scaffold_32_18
unknown

Not on your lists

comp(22009..22209)
DNA (201bp) protein (67aa)

This feature has no annotations

L3_083_000G1_scaffold_32_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22330..23058
DNA (729bp) protein (243aa)
Two-component response regulator n=193 Tax=Clostridium difficile RepID=C9XMQ6_CLODC
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CBE05735.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_083_000G1_scaffold_32_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23052..24362
DNA (1311bp) protein (437aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=105 Tax=Clostridium difficile RepID=G6C064_CLODI
two-component sensor histidine kinase
L3_083_000G1_scaffold_32_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24479..25162
DNA (684bp) protein (228aa)
ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=55 Tax=Clostridium difficile RepID=T2TK02_CLODI
ABC transporter family protein {ECO:0000313|EMBL:EQE60812.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_083_000G1_scaffold_32_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25155..27542
DNA (2388bp) protein (796aa)
FtsX-like permease family protein n=2 Tax=Clostridium difficile RepID=T4Z8J9_CLODI
FtsX-like permease family protein {ECO:0000313|EMBL:EQE60792.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
ABC-type transport system, permease
L3_083_000G1_scaffold_32_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27822..28964
DNA (1143bp) protein (381aa)
alanine--glyoxylate transaminase (EC:2.6.1.-)
Aminotransferase, alanine--glyoxylate transaminase {ECO:0000313|EMBL:CCL22871.1}; EC=2.6.1.- {ECO:0000313|EMBL:CCL22871.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Aminotransferase class-V family protein n=38 Tax=Clostridium difficile RepID=T2TGK8_CLODI
L3_083_000G1_scaffold_32_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28983..29507
DNA (525bp) protein (175aa)
ECF-type riboflavin transporter, S component family protein n=30 Tax=Clostridium difficile RepID=T3GEH2_CLODC
membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ69418.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_083_000G1_scaffold_32_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29607..30425
DNA (819bp) protein (273aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=3 Tax=Clostridium difficile RepID=T2VF05_CLODI
Bacterial regulatory helix-turn-helix s, AraC family protein {ECO:0000313|EMBL:EQH98493.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Transcriptional regulator, AraC family
L3_083_000G1_scaffold_32_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30503..30814
DNA (312bp) protein (104aa)
Uncharacterized protein n=162 Tax=Clostridium difficile RepID=C9XMP9_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ24631.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_083_000G1_scaffold_32_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30991..31656)
DNA (666bp) protein (222aa)
Uncharacterized protein n=118 Tax=Clostridium difficile RepID=T3GDK7_CLODC
Uncharacterized protein {ECO:0000313|EMBL:EQI80526.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
conserved hypothetical protein
L3_083_000G1_scaffold_32_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31767..32408)
DNA (642bp) protein (214aa)
Bacterial regulatory s, tetR family protein n=5 Tax=Clostridium difficile RepID=T4ANW2_CLODI
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:EQH98490.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Transcriptional regulator, TetR family
L3_083_000G1_scaffold_32_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32582..34585)
DNA (2004bp) protein (668aa)
1,4-alpha-glucan branching enzyme {ECO:0000256|SAAS:SAAS00046836}; EC=2.4.1.18 {ECO:0000256|SAAS:SAAS00046836};; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
Alpha amylase, catalytic domain protein n=2 Tax=Clostridium difficile RepID=T4PM66_CLODI
gbeA; glycogen branching enzyme
L3_083_000G1_scaffold_32_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34738..35376)
DNA (639bp) protein (213aa)
Regulatory protein RecX n=181 Tax=Clostridium difficile RepID=RECX_CLOD6
recX; Regulatory protein RecX
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Displaying items 1-30 of 169 in total

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