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L3_083_000G1_scaffold_40

Search features with annotation key words

Displaying items 1-30 of 174 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_40_1
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..371
DNA (369bp) protein (123aa)
Dinitrogenase iron-molybdenum cofactor n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FWN9_9FIRM
Dinitrogenase iron-molybdenum cofactor {ECO:0000313|EMBL:EEG92949.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Predicted DNA-binding proteins
L3_083_000G1_scaffold_40_2

Not on your lists

comp(730..1137)
DNA (408bp) protein (136aa)
ISSag9, transposase (Fragment) n=1 Tax=human gut metagenome RepID=K1SEC5_9ZZZZ
ISSag9, transposase {ECO:0000313|EMBL:EKC45781.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_083_000G1_scaffold_40_3
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1190..2044)
DNA (855bp) protein (285aa)
Transposase IS30 family n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9H1_9CLOT
Transposase IS30 family {ECO:0000313|EMBL:CDD73988.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
transposase and inactivated derivatives IS30 family-like protein
L3_083_000G1_scaffold_40_4
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2374..2580
DNA (207bp) protein (69aa)
Predicted transcriptional regulator n=2 Tax=Lachnospiraceae RepID=D4JB98_9FIRM
Predicted transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:EGX70835.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
L3_083_000G1_scaffold_40_5
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2596..5394
DNA (2799bp) protein (933aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZHT4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ12139.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
hypothetical protein
L3_083_000G1_scaffold_40_6
unknown

Not on your lists

5486..5593
DNA (108bp) protein (36aa)

This feature has no annotations

L3_083_000G1_scaffold_40_7
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5683..6501
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) RepID=C4Z263_EUBE2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR71253.1}; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain ATCC 27750 / VPI C15-48).;"
L3_083_000G1_scaffold_40_8
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6570..7592
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2A4E9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ24232.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
hypothetical protein
L3_083_000G1_scaffold_40_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7852..8109
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHX8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77868.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_083_000G1_scaffold_40_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8073..8240)
DNA (168bp) protein (56aa)
Transposase IS4 family protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQ13_9FIRM
Transposase IS4 family protein {ECO:0000313|EMBL:CCZ77869.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_083_000G1_scaffold_40_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8402..9076)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIJ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77870.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
transposase
L3_083_000G1_scaffold_40_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9283..10356
DNA (1074bp) protein (358aa)
Putative transcriptional regulator n=1 Tax=Roseburia sp. CAG:18 RepID=R5V399_9FIRM
Putative transcriptional regulator {ECO:0000313|EMBL:CCZ77871.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative transcriptional regulator
L3_083_000G1_scaffold_40_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10425..11306
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAX6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77872.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_083_000G1_scaffold_40_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11369..11689)
DNA (321bp) protein (107aa)
Plasmid stabilization system protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQ18_9FIRM
Plasmid stabilization system protein {ECO:0000313|EMBL:CCZ77874.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Plasmid stabilization system protein
L3_083_000G1_scaffold_40_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11686..11949)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77875.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
prevent-host-death family protein
L3_083_000G1_scaffold_40_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12917..13141
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3A4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77876.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_083_000G1_scaffold_40_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13220..16258
DNA (3039bp) protein (1013aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77877.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Protein of unknown function (DUF2726).
L3_083_000G1_scaffold_40_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16424..17308
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77878.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_083_000G1_scaffold_40_19
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17875..19920
DNA (2046bp) protein (682aa)
Sigma-70 region 2 n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D878_9CLOT
Sigma-70 region 2 {ECO:0000313|EMBL:EEG52465.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
RNA polymerase sigma factor, sigma-70 family
L3_083_000G1_scaffold_40_20
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19941..20726
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N9T3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS79848.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L3_083_000G1_scaffold_40_21
unknown

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20746..21651
DNA (906bp) protein (302aa)

This feature has no annotations

L3_083_000G1_scaffold_40_22
unknown

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21696..22184
DNA (489bp) protein (163aa)

This feature has no annotations

L3_083_000G1_scaffold_40_23
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22199..22774
DNA (576bp) protein (192aa)
Glycosyl hydrolase family 25 n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FKF8_9FIRM
Glycosyl hydrolase family 25 {ECO:0000313|EMBL:CDB12515.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
Bacterial Ig-like domain (group 2)./Fibronectin type III domain.
L3_083_000G1_scaffold_40_24
unknown

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22832..22924
DNA (93bp) protein (31aa)

This feature has no annotations

L3_083_000G1_scaffold_40_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23343..24344
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQ23_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77879.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted Na+-dependent transporter
L3_083_000G1_scaffold_40_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24440..25066
DNA (627bp) protein (209aa)
Transcriptional regulator TetR family n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIK9_9FIRM
Transcriptional regulator TetR family {ECO:0000313|EMBL:CCZ77880.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Transcriptional regulator
L3_083_000G1_scaffold_40_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25248..25964
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3A9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77881.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_083_000G1_scaffold_40_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25975..29010
DNA (3036bp) protein (1012aa)
Putative efflux ABC transporter permease protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAY5_9FIRM
Putative efflux ABC transporter permease protein {ECO:0000313|EMBL:CCZ77882.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ABC-type transport system, involved in lipoprotein release, permease component
L3_083_000G1_scaffold_40_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29112..29654)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHZ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77883.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_083_000G1_scaffold_40_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29835..30689
DNA (855bp) protein (285aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQ28_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CCZ77884.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
N-acetylmuramoyl-L-alanine amidase domain protein
Displaying items 1-30 of 174 in total

View Taxonomy