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L3_083_000G1_scaffold_108

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Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_108_1
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(245..574)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI0002DFE06C
Uncharacterized protein {ECO:0000313|EMBL:KEZ88801.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
fliT; flagellar protein FliT
L3_083_000G1_scaffold_108_2
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(578..2635)
DNA (2058bp) protein (686aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H487_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98379.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
flagellar cap protein FliD
L3_083_000G1_scaffold_108_3

Not on your lists

comp(2653..3036)
DNA (384bp) protein (128aa)
Flagellar protein FliS n=1 Tax=Clostridium colicanis 209318 RepID=N9XRG7_9CLOT
Flagellar protein FliS {ECO:0000313|EMBL:ETJ19571.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
fliS; flagellar assembly protein FliS
L3_083_000G1_scaffold_108_4
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3046..3333)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M9X1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHJ01510.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
hypothetical protein
L3_083_000G1_scaffold_108_5
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3337..3681)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BSU1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR20138.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
flaG family protein
L3_083_000G1_scaffold_108_6
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3694..3909)
DNA (216bp) protein (72aa)
Hypothetical Carbon storage regulator homolog n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F888_9CLOT
Hypothetical Carbon storage regulator homolog {ECO:0000313|EMBL:CDG01253.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
carbon storage regulator, CsrA
L3_083_000G1_scaffold_108_7
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3914..4291)
DNA (378bp) protein (126aa)
Flagellar assembly factor FliW n=1 Tax=Clostridium sp. DL-VIII RepID=G7M9X4_9CLOT
Flagellar assembly factor FliW {ECO:0000256|HAMAP-Rule:MF_01185}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
flagellar assembly protein FliW
L3_083_000G1_scaffold_108_8
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4307..5299)
DNA (993bp) protein (331aa)
Flagellar hook-associated protein 3 n=1 Tax=Clostridium intestinale URNW RepID=U2N8N7_9CLOT
Flagellar hook-associated protein 3 {ECO:0000313|EMBL:ERK31882.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
flagellar hook-associated protein 3
L3_083_000G1_scaffold_108_9
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5340..7130)
DNA (1791bp) protein (597aa)
Flagellar hook-associated protein FlgK n=1 Tax=Clostridium colicanis 209318 RepID=N9Y297_9CLOT
Flagellar hook-associated protein FlgK {ECO:0000313|EMBL:ENZ02284.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
flagellar hook-associated protein FlgK
L3_083_000G1_scaffold_108_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7142..7552)
DNA (411bp) protein (137aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TLR3_CLOBB
hypothetical protein
Putative FlgN protein protein {ECO:0000313|EMBL:CDH89731.1}; Uncharacterized protein {ECO:0000313|EMBL:ACD23088.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_083_000G1_scaffold_108_11
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7545..7829)
DNA (285bp) protein (95aa)
anti-sigma-28 factor FlgM n=1 Tax=Clostridium botulinum RepID=UPI00037338AB
negative regulator of flagellin synthesis
Flagellar biosynthesis anti-sigma factor FlgM {ECO:0000313|EMBL:KIL09012.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L3_083_000G1_scaffold_108_12
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7982..9139)
DNA (1158bp) protein (386aa)
Flagellar motor switch protein n=1 Tax=Clostridium intestinale URNW RepID=U2NSW1_9CLOT
Flagellar motor switch protein {ECO:0000313|EMBL:ERK31951.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
flagellar motor switch protein
L3_083_000G1_scaffold_108_13
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9126..10121)
DNA (996bp) protein (332aa)
Flagellar motor switch protein FliM n=2 Tax=Clostridium botulinum B RepID=B2TLR0_CLOBB
fliM; flagellar motor switch protein FliM
Flagellar motor switch protein FliM {ECO:0000313|EMBL:ACD22898.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_083_000G1_scaffold_108_14
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10137..10535)
DNA (399bp) protein (133aa)
Putative CheW protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M1D4_CLOB8
putative CheW protein
Putative CheW protein {ECO:0000313|EMBL:ABR36414.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_083_000G1_scaffold_108_15
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10562..10924)
DNA (363bp) protein (121aa)
Chemotaxis protein CheY n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MWP3_CLOSA
cheY6; chemotaxis protein CheY
Chemotaxis protein CheY {ECO:0000313|EMBL:AGX44938.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_083_000G1_scaffold_108_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10941..11540)
DNA (600bp) protein (200aa)
Chemotaxis protein CheC n=2 Tax=Clostridium butyricum RepID=M8JG02_CLOBU
Chemotaxis protein CheY {ECO:0000313|EMBL:KHD15827.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
chemotaxis protein CheC
L3_083_000G1_scaffold_108_17
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11562..13547)
DNA (1986bp) protein (662aa)
chemotaxis protein CheA (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
Chemotaxis protein CheA n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V1Y7_CLOBA
L3_083_000G1_scaffold_108_18
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13561..14358)
DNA (798bp) protein (266aa)
cheR; CheR methyltransferase, SAM binding domain (EC:2.1.1.80)
Chemotaxis protein methyltransferase, CheR n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V1Y6_CLOBA
Chemotaxis protein CheR {ECO:0000313|EMBL:KIL09005.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L3_083_000G1_scaffold_108_19
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14402..14890)
DNA (489bp) protein (163aa)
cheD; chemoreceptor glutamine deamidase CheD (EC:3.5.1.44)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MWP6_CLOSA
L3_083_000G1_scaffold_108_20
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14899..15351)
DNA (453bp) protein (151aa)
Chemotaxis protein chew n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MUI9_9CLOT
cheW; chemotaxis protein chew
Chemotaxis protein chew {ECO:0000313|EMBL:AGF58346.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_083_000G1_scaffold_108_21
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15361..17259)
DNA (1899bp) protein (633aa)
Putative uncharacterized protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V1Y2_CLOBA
Serine phosphatase RsbU, regulator of sigma subunit {ECO:0000313|EMBL:KIL09002.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
hypothetical protein
L3_083_000G1_scaffold_108_22
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17334..18137)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Clostridium botulinum RepID=UPI0002FC5FD7
Aminotransferase, class IV {ECO:0000313|EMBL:AJH01366.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
class IV aminotransferase
L3_083_000G1_scaffold_108_23
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18152..18790)
DNA (639bp) protein (213aa)
HAD-superfamily subfamily IB hydrolase n=1 Tax=Clostridium sp. CAG:221 RepID=R6GKV5_9CLOT
HAD-superfamily subfamily IB hydrolase {ECO:0000313|EMBL:CDB14812.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
HAD family hydrolase
L3_083_000G1_scaffold_108_24
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18866..20059)
DNA (1194bp) protein (398aa)
aspartate aminotransferase (EC:2.6.1.1)
Aspartate aminotransferase n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V1X9_CLOBA
Aspartate aminotransferase {ECO:0000313|EMBL:KIL08999.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L3_083_000G1_scaffold_108_25
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20074..20898)
DNA (825bp) protein (275aa)
PHP domain-containing protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BSY3_9CLOT
PHP domain-containing protein {ECO:0000313|EMBL:EOR20178.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
PHP domain protein
L3_083_000G1_scaffold_108_26
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21057..21383)
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=2 Tax=Clostridium botulinum E RepID=B2V1X8_CLOBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIL08998.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L3_083_000G1_scaffold_108_27
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21641..25153)
DNA (3513bp) protein (1171aa)
nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase (EC:1.2.7.1)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
Pyruvate-flavodoxin oxidoreductase NifJ n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MWJ2_CLOSA
L3_083_000G1_scaffold_108_28
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25427..26500)
DNA (1074bp) protein (358aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TUU0_9CLOT
L3_083_000G1_scaffold_108_29
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26633..26815
DNA (183bp) protein (61aa)
Small, acid-soluble spore protein C1 n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HHP1_9CLOT
Small, acid-soluble spore protein C1 {ECO:0000313|EMBL:EEH99098.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
sspC1; small, acid-soluble spore protein
L3_083_000G1_scaffold_108_30
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26867..28621)
DNA (1755bp) protein (585aa)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H498_9CLOT
recJ; single-stranded-DNA-specific exonuclease RecJ
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:AIY82788.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Displaying items 1-30 of 122 in total

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