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L3_083_000G1_scaffold_131

Search features with annotation key words

Displaying items 1-30 of 115 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_131_1
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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268..1602
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1P0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ01722.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
hypothetical protein
L3_083_000G1_scaffold_131_2
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1602..2921
DNA (1320bp) protein (440aa)
GTPase Der n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U0N2_9CLOT
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
engA; GTP-binding protein EngA
L3_083_000G1_scaffold_131_3
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2921..3913
DNA (993bp) protein (331aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; Flags: Precursor;; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Clostridium sp. DL-VIII RepID=G7MCS5_9CLOT
L3_083_000G1_scaffold_131_4
unknown

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comp(3945..4469)
DNA (525bp) protein (175aa)

This feature has no annotations

L3_083_000G1_scaffold_131_5
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4714..6192
DNA (1479bp) protein (493aa)
Stage IV sporulation protein A {ECO:0000256|PIRNR:PIRNR007466}; EC=3.6.1.3 {ECO:0000256|PIRNR:PIRNR007466};; Coat morphogenetic protein SpoIVA {ECO:0000256|PIRNR:PIRNR007466}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
spoIVA; stage IV sporulation protein A (EC:3.6.1.3)
Stage IV sporulation protein A n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FLR0_9CLOT
L3_083_000G1_scaffold_131_6
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6225..7250)
DNA (1026bp) protein (342aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid aminotransferase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1Q6J0_9CLOT
L3_083_000G1_scaffold_131_7
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7401..7802
DNA (402bp) protein (134aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JJB2_CLOBU
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS {ECO:0000313|EMBL:KJZ84601.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
hypothetical protein
L3_083_000G1_scaffold_131_8
unknown

Not on your lists

7874..7978
DNA (105bp) protein (35aa)

This feature has no annotations

L3_083_000G1_scaffold_131_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7995..8990
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1P4_9CLOT
asparaginase family protein
Asparaginase family protein {ECO:0000313|EMBL:AIY85125.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_083_000G1_scaffold_131_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9255..10622
DNA (1368bp) protein (456aa)
Inner membrane protein YicO n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UXW5_CLOBO
Inner membrane protein YicO {ECO:0000313|EMBL:EES50587.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
inner membrane protein YicO
L3_083_000G1_scaffold_131_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11335..12216
DNA (882bp) protein (294aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R2X8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ETI91308.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
hypothetical protein
L3_083_000G1_scaffold_131_12
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12236..12505
DNA (270bp) protein (90aa)
UPF0296 protein CLL_A1210 n=2 Tax=Clostridium botulinum B RepID=Y1210_CLOBB
hypothetical protein
UPF0296 protein CLL_A1210 {ECO:0000255|HAMAP-Rule:MF_01503}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_083_000G1_scaffold_131_13
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12507..13130
DNA (624bp) protein (208aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
Guanylate kinase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EZ18_9CLOT
gmk; guanylate kinase
L3_083_000G1_scaffold_131_14
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13123..13341
DNA (219bp) protein (73aa)
rpoZ; DNA-directed RNA polymerase, omega subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
DNA-directed RNA polymerase subunit omega n=1 Tax=Clostridium intestinale URNW RepID=U2NPG4_9CLOT
L3_083_000G1_scaffold_131_15
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13344..14534
DNA (1191bp) protein (397aa)
coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase (EC:4.1.1.36)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H417_9CLOT
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase {ECO:0000313|EMBL:EEH98195.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
L3_083_000G1_scaffold_131_16
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14580..16787
DNA (2208bp) protein (736aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
Primosomal protein N n=2 Tax=Clostridium butyricum RepID=B1R2X3_CLOBU
priA; primosomal protein N'
L3_083_000G1_scaffold_131_17
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16799..17242
DNA (444bp) protein (148aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CEK4_9CLOT
L3_083_000G1_scaffold_131_18
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17260..18186
DNA (927bp) protein (309aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
fmt; methionyl-tRNA formyltransferase Fmt (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H7N7_9CLOT
L3_083_000G1_scaffold_131_19
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18201..18890
DNA (690bp) protein (230aa)
Conserved protein YugP n=4 Tax=Clostridium botulinum RepID=B2THS3_CLOBB
hypothetical protein
Conserved protein YugP {ECO:0000313|EMBL:ACD23829.1}; Putative neutral zinc metallopeptidase {ECO:0000313|EMBL:CDH90135.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_083_000G1_scaffold_131_20
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18903..20222
DNA (1320bp) protein (440aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSJ3_CLOSA
sun; ribosomal RNA small subunit methyltransferase B
L3_083_000G1_scaffold_131_21
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20231..21274
DNA (1044bp) protein (348aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FLS0_9CLOT
rlmN; 23S rRNA methyltransferase
L3_083_000G1_scaffold_131_22
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21295..22014
DNA (720bp) protein (240aa)
protein phosphatase PrpC (EC:3.1.3.16)
Protein serine/threonine phosphatase n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYE9_9CLOT
Protein serine/threonine phosphatase {ECO:0000313|EMBL:EHI98441.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
L3_083_000G1_scaffold_131_23
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22016..22804
DNA (789bp) protein (263aa)
Protein kinase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G4M0_CLOPA
protein kinase
Protein kinase {ECO:0000313|EMBL:ETD71459.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L3_083_000G1_scaffold_131_24
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22788..23984
DNA (1197bp) protein (399aa)
Putative Serine/threonine protein kinase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EZ26_9CLOT
tyrosine kinase family protein
Tyrosine kinase family protein {ECO:0000313|EMBL:AIY84600.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_083_000G1_scaffold_131_25
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24117..24986
DNA (870bp) protein (290aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EK14_9CLOT
rsgA; ribosome small subunit-dependent GTPase A
L3_083_000G1_scaffold_131_26
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24980..25630
DNA (651bp) protein (217aa)
rpe; ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461, ECO:0000313|EMBL:AIY80063.1}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461, ECO:0000313|EMBL:AIY80063.1};; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
Ribulose-phosphate 3-epimerase n=1 Tax=Clostridium intestinale URNW RepID=U2NMI5_9CLOT
L3_083_000G1_scaffold_131_27
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25630..26265
DNA (636bp) protein (212aa)
thiamine pyrophosphokinase (EC:2.7.6.2)
Thiamine pyrophosphokinase {ECO:0000313|EMBL:AIY83305.1}; EC=2.7.6.2 {ECO:0000313|EMBL:AIY83305.1};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Thiamine pyrophosphokinase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G5X5_CLOPA
L3_083_000G1_scaffold_131_28
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(26539..26730)
DNA (192bp) protein (64aa)
50S ribosomal protein L28 n=3 Tax=Clostridium RepID=R9CEJ6_9CLOT
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
rpmB; 50S ribosomal protein L28
L3_083_000G1_scaffold_131_29
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26928..27278
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WFB6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ01746.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
hypothetical protein
L3_083_000G1_scaffold_131_30
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27290..28939
DNA (1650bp) protein (550aa)
DAK2 domain fusion protein YloV n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1R0_9CLOT
DAK2 domain fusion YloV family protein
DAK2 domain fusion YloV family protein {ECO:0000313|EMBL:AIY82303.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Displaying items 1-30 of 115 in total

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